Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HR073_RS16025 Genome accession   NZ_CP054227
Coordinates   3412594..3413109 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EcPF15     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3407594..3418109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR073_RS16000 (HR073_15990) ygaZ 3407993..3408730 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  HR073_RS16005 (HR073_15995) ygaH 3408720..3409055 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  HR073_RS16010 (HR073_16000) emrR 3409146..3409676 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HR073_RS16015 (HR073_16005) emrA 3409803..3410975 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HR073_RS16020 (HR073_16010) emrB 3410992..3412530 (+) 1539 WP_086732276.1 multidrug efflux MFS transporter permease subunit EmrB -
  HR073_RS16025 (HR073_16015) luxS 3412594..3413109 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HR073_RS16030 (HR073_16020) gshA 3413259..3414815 (-) 1557 WP_000611791.1 glutamate--cysteine ligase -
  HR073_RS16035 (HR073_16025) yqaA 3414888..3415316 (-) 429 WP_001287454.1 YqaA family protein -
  HR073_RS16040 (HR073_16030) yqaB 3415313..3415879 (-) 567 WP_000273303.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HR073_RS16070 (HR073_16060) csrA 3417471..3417656 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=398339 HR073_RS16025 WP_001130211.1 3412594..3413109(-) (luxS) [Escherichia coli strain EcPF15]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=398339 HR073_RS16025 WP_001130211.1 3412594..3413109(-) (luxS) [Escherichia coli strain EcPF15]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment