Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GII77_RS08545 Genome accession   NZ_CP045825
Coordinates   1603796..1604074 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain 75     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598796..1609074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS08525 (GII77_08525) panEB 1599984..1600895 (+) 912 WP_015252174.1 ketopantoate reductase family protein -
  GII77_RS08530 (GII77_08530) ampS 1600929..1602161 (-) 1233 WP_003232341.1 aminopeptidase -
  GII77_RS08535 (GII77_08535) ykpC 1602270..1602404 (-) 135 WP_003238865.1 protein YkpC -
  GII77_RS08540 (GII77_08540) mreBH 1602505..1603512 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  GII77_RS08545 (GII77_08545) abrB 1603796..1604074 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  GII77_RS08550 (GII77_08550) kinC 1604264..1605550 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  GII77_RS08555 (GII77_08555) ykqA 1605566..1606399 (+) 834 WP_015252173.1 gamma-glutamylcyclotransferase -
  GII77_RS08560 (GII77_08560) ktrC 1606462..1607127 (+) 666 WP_015252172.1 Ktr system potassium transporter KtrC -
  GII77_RS08565 (GII77_08565) ade 1607283..1609016 (+) 1734 WP_015252171.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=398295 GII77_RS08545 WP_003244728.1 1603796..1604074(+) (abrB) [Bacillus subtilis strain 75]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=398295 GII77_RS08545 WP_003244728.1 1603796..1604074(+) (abrB) [Bacillus subtilis strain 75]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment