Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GII77_RS08425 Genome accession   NZ_CP045825
Coordinates   1579714..1580289 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain 75     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574714..1585289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS08395 (GII77_08395) dapD 1574900..1575610 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GII77_RS08400 (GII77_08400) dapI 1575680..1576804 (+) 1125 WP_015252188.1 N-acetyldiaminopimelate deacetylase -
  GII77_RS08405 (GII77_08405) ykuS 1576866..1577111 (+) 246 WP_003232382.1 YkuS family protein -
  GII77_RS08410 (GII77_08410) mscT 1577148..1577951 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  GII77_RS08415 (GII77_08415) ahpA 1578188..1578730 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  GII77_RS08420 (GII77_08420) ykuV 1578802..1579248 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  GII77_RS08425 (GII77_08425) rok 1579714..1580289 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  GII77_RS08430 (GII77_08430) cse15 1580330..1581295 (-) 966 WP_044052541.1 spore protein Cse15 -
  GII77_RS08435 (GII77_08435) mobA 1581432..1582031 (+) 600 WP_015252185.1 molybdenum cofactor guanylyltransferase -
  GII77_RS08440 (GII77_08440) moeB 1582082..1583101 (+) 1020 WP_044052540.1 molybdopterin-synthase adenylyltransferase MoeB -
  GII77_RS08445 (GII77_08445) glp 1583119..1584411 (+) 1293 WP_015252183.1 gephyrin-like molybdotransferase Glp -
  GII77_RS08450 (GII77_08450) mobB 1584372..1584893 (+) 522 WP_015252182.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=398294 GII77_RS08425 WP_003232378.1 1579714..1580289(+) (rok) [Bacillus subtilis strain 75]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=398294 GII77_RS08425 WP_003232378.1 1579714..1580289(+) (rok) [Bacillus subtilis strain 75]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment