Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GII77_RS05920 Genome accession   NZ_CP045825
Coordinates   1129799..1130377 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain 75     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124799..1135377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS05900 (GII77_05900) hemAT 1125310..1126608 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  GII77_RS05905 (GII77_05905) comW 1126747..1128276 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  GII77_RS05910 (GII77_05910) yhxC 1128388..1129245 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  GII77_RS05915 (GII77_05915) yhzC 1129273..1129506 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  GII77_RS05920 (GII77_05920) comK 1129799..1130377 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  GII77_RS05925 (GII77_05925) yhxD 1130422..1131321 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  GII77_RS05930 (GII77_05930) yhjA 1131539..1131808 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  GII77_RS05935 (GII77_05935) yhjB 1131852..1133321 (-) 1470 WP_015252422.1 sodium:solute symporter -
  GII77_RS05940 (GII77_05940) yhjC 1133318..1133518 (-) 201 WP_015252421.1 DUF3311 domain-containing protein -
  GII77_RS05945 (GII77_05945) - 1133717..1134088 (-) 372 WP_014476361.1 hypothetical protein -
  GII77_RS05950 (GII77_05950) yhjE 1134240..1134863 (+) 624 WP_010886465.1 VTT domain-containing protein -
  GII77_RS05955 (GII77_05955) lepB 1134865..1135371 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=398281 GII77_RS05920 WP_003245329.1 1129799..1130377(+) (comK) [Bacillus subtilis strain 75]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=398281 GII77_RS05920 WP_003245329.1 1129799..1130377(+) (comK) [Bacillus subtilis strain 75]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment