Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HR074_RS08830 Genome accession   NZ_CP054224
Coordinates   1854936..1856363 (-) Length   475 a.a.
NCBI ID   WP_074150700.1    Uniprot ID   -
Organism   Escherichia coli strain EcPF16     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1849936..1861363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR074_RS08800 (HR074_08800) yeeZ 1849991..1850815 (+) 825 WP_000754752.1 SDR family oxidoreductase -
  HR074_RS08805 (HR074_08805) yeeY 1850861..1851790 (+) 930 WP_032177447.1 LysR substrate-binding domain-containing protein -
  HR074_RS08810 (HR074_08810) yoeI 1852005..1852067 (+) 63 WP_010723108.1 membrane protein YoeI -
  HR074_RS08815 (HR074_08815) plaP 1852057..1853415 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HR074_RS08820 (HR074_08820) tsuA 1853594..1854652 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  HR074_RS08825 (HR074_08825) tsuB 1854666..1854893 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HR074_RS08830 (HR074_08830) sbcB 1854936..1856363 (-) 1428 WP_074150700.1 exodeoxyribonuclease I Machinery gene
  HR074_RS08835 (HR074_08835) dacD 1856572..1857738 (+) 1167 WP_172698609.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HR074_RS08840 (HR074_08840) sbmC 1857857..1858330 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  HR074_RS08845 (HR074_08845) yeeA 1858528..1859586 (+) 1059 WP_001200891.1 FUSC family protein -
  HR074_RS08850 (HR074_08850) tmaR 1859758..1860087 (+) 330 WP_000450409.1 DUF496 family protein -
  HR074_RS08855 (HR074_08855) - 1860188..1860373 (-) 186 Protein_1750 EutP/PduV family microcompartment system protein -
  HR074_RS08860 (HR074_08860) - 1860424..1860570 (+) 147 Protein_1751 transposase domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4700

>NTDB_id=398244 HR074_RS08830 WP_074150700.1 1854936..1856363(-) (sbcB) [Escherichia coli strain EcPF16]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=398244 HR074_RS08830 WP_074150700.1 1854936..1856363(-) (sbcB) [Escherichia coli strain EcPF16]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583