Detailed information NTG0398231

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HR074_RS05325
• Genome accession: NZ_CP054224
• Coordinates: 1097886..1098878 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EcPF16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1092886..1103878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HR074_RS05295 (HR074_05295)	ispD	1092947..1093657 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HR074_RS05300 (HR074_05300)	ispF	1093657..1094136 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HR074_RS05305 (HR074_05305)	truD	1094133..1095182 (+)	1050	WP_032238484.1	tRNA pseudouridine(13) synthase TruD	-
HR074_RS05310 (HR074_05310)	surE	1095163..1095924 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HR074_RS05315 (HR074_05315)	pcm	1095918..1096544 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HR074_RS05320 (HR074_05320)	nlpD	1096729..1097823 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HR074_RS05325 (HR074_05325)	rpoS	1097886..1098878 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HR074_RS05330 (HR074_05330)	ygbN	1098972..1100336 (-)	1365	WP_000104441.1	GntP family transporter	-
HR074_RS05335 (HR074_05335)	ygbM	1100425..1101201 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HR074_RS05340 (HR074_05340)	ygbL	1101206..1101844 (-)	639	WP_001278994.1	aldolase	-
HR074_RS05345 (HR074_05345)	otnK	1101841..1103103 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=398231 HR074_RS05325 WP_000081550.1 1097886..1098878(+) (rpoS) [Escherichia coli strain EcPF16]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=398231 HR074_RS05325 WP_000081550.1 1097886..1098878(+) (rpoS) [Escherichia coli strain EcPF16]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715