Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GII78_RS13085 Genome accession   NZ_CP045824
Coordinates   2515266..2516069 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2510266..2521069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS13060 (GII78_13060) glpQB 2511404..2512135 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  GII78_RS13065 (GII78_13065) yqiI 2512214..2512834 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  GII78_RS13070 (GII78_13070) - 2512854..2513150 (-) 297 WP_014480225.1 hypothetical protein -
  GII78_RS13075 (GII78_13075) - 2513458..2513610 (+) 153 WP_014480226.1 hypothetical protein -
  GII78_RS13080 (GII78_13080) yqiG 2513683..2514801 (+) 1119 WP_029726733.1 NADH-dependent flavin oxidoreductase -
  GII78_RS13085 (GII78_13085) spo0A 2515266..2516069 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GII78_RS13090 (GII78_13090) spoIVB 2516345..2517625 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  GII78_RS13095 (GII78_13095) recN 2517799..2519529 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  GII78_RS13100 (GII78_13100) argR 2519566..2520015 (-) 450 WP_003230265.1 arginine repressor ArgR -
  GII78_RS13105 (GII78_13105) yqxC 2520113..2520958 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=398222 GII78_RS13085 WP_003226427.1 2515266..2516069(-) (spo0A) [Bacillus subtilis strain MB8_B10]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=398222 GII78_RS13085 WP_003226427.1 2515266..2516069(-) (spo0A) [Bacillus subtilis strain MB8_B10]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCTGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment