Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GII79_RS19025 Genome accession   NZ_CP045823
Coordinates   3646032..3646721 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain MB8_B1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3641032..3651721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII79_RS18990 (GII79_18990) flgN 3641212..3641694 (-) 483 WP_014481048.1 flagellar protein FlgN -
  GII79_RS18995 (GII79_18995) flgM 3641710..3641976 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  GII79_RS19000 (GII79_19000) yvyF 3642057..3642476 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GII79_RS19005 (GII79_19005) comFC 3642550..3643272 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  GII79_RS19010 (GII79_19010) comFB 3643236..3643532 (-) 297 WP_015483764.1 late competence protein ComFB -
  GII79_RS19015 (GII79_19015) comFA 3643592..3644983 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  GII79_RS19020 (GII79_19020) fakBA 3645089..3645934 (-) 846 WP_003227986.1 DegV family protein -
  GII79_RS19025 (GII79_19025) degU 3646032..3646721 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GII79_RS19030 (GII79_19030) degS 3646804..3647961 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GII79_RS19035 (GII79_19035) yvyE 3648178..3648831 (+) 654 WP_003227979.1 YigZ family protein -
  GII79_RS19040 (GII79_19040) tagV 3648831..3650006 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GII79_RS19045 (GII79_19045) tagO 3650079..3651155 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=398174 GII79_RS19025 WP_003219701.1 3646032..3646721(-) (degU) [Bacillus subtilis strain MB8_B1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=398174 GII79_RS19025 WP_003219701.1 3646032..3646721(-) (degU) [Bacillus subtilis strain MB8_B1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment