Detailed information NTG0398166

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: HR075_RS11980
• Genome accession: NZ_CP054219
• Coordinates: 2498850..2499833 (-)
• Length: 327 a.a.
• NCBI ID: WP_001196477.1
• Uniprot ID: A0A0H2VBW7
• Organism: Escherichia coli strain EcPF18
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 2493850..2504833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HR075_RS11955 (HR075_11950)	-	2494999..2495106 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
HR075_RS11960 (HR075_11955)	-	2495482..2495589 (-)	108	WP_000170745.1	type I toxin-antitoxin system toxin Ldr family protein	-
HR075_RS11965 (HR075_11960)	-	2495965..2496072 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
HR075_RS11970 (HR075_11965)	yhjV	2496548..2497819 (+)	1272	WP_001296513.1	aromatic amino acid transport family protein	-
HR075_RS11975 (HR075_11970)	dppF	2497849..2498853 (-)	1005	WP_000103571.1	dipeptide ABC transporter ATP-binding subunit DppF	-
HR075_RS11980 (HR075_11975)	amiE	2498850..2499833 (-)	984	WP_001196477.1	dipeptide ABC transporter ATP-binding protein	Regulator
HR075_RS11985 (HR075_11980)	dppC	2499844..2500746 (-)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
HR075_RS11990 (HR075_11985)	dppB	2500756..2501775 (-)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
HR075_RS11995 (HR075_11990)	dppA	2502082..2503689 (-)	1608	WP_001222871.1	dipeptide ABC transporter substrate-binding protein DppA	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35801.38 Da
• Isoelectric Point: 6.5813

>NTDB_id=398166 HR075_RS11980 WP_001196477.1 2498850..2499833(-) (amiE) [Escherichia coli strain EcPF18]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNLVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDKCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=398166 HR075_RS11980 WP_001196477.1 2498850..2499833(-) (amiE) [Escherichia coli strain EcPF18]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCTGTAGACCGCATCAG
CTACAGCGTAAAACAGGGTGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCAATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAAGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCTGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCAACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATTATCGAACTGCTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATTATCGTGATGTATGCAGGCCAGGTAGTAGAAACGGGCGATGCGCACGCT
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTACGCCA
CTGACAAATGCCGTGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• ABC transporter (ABC_tran) (24-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

3D structure

• AlphaFold DB: A0A0H2VBW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMG 18311	42.991	98.165	0.422
amiE	Streptococcus thermophilus LMD-9	42.991	98.165	0.422
oppD	Streptococcus mutans UA159	41.379	97.554	0.404