Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GII79_RS12000 Genome accession   NZ_CP045823
Coordinates   2327255..2327875 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2322255..2332875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII79_RS11960 (GII79_11960) ptsA 2323383..2323889 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  GII79_RS11965 (GII79_11965) ypqA 2324027..2324446 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  GII79_RS11970 (GII79_11970) sppG 2324467..2324844 (-) 378 WP_015251832.1 YppG family protein -
  GII79_RS11975 (GII79_11975) yppF 2325032..2325220 (+) 189 WP_003230690.1 YppF family protein -
  GII79_RS11980 (GII79_11980) yppE 2325262..2325633 (-) 372 WP_029726786.1 YppE family protein -
  GII79_RS11985 (GII79_11985) yppD 2325679..2325924 (-) 246 WP_015251831.1 YppD family protein -
  GII79_RS11990 (GII79_11990) sspM 2326123..2326227 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GII79_RS11995 (GII79_11995) yppC 2326252..2327214 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  GII79_RS12000 (GII79_12000) recU 2327255..2327875 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GII79_RS12005 (GII79_12005) ponA 2327897..2330641 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  GII79_RS12010 (GII79_12010) ypoC 2330717..2331211 (-) 495 WP_029726783.1 YpoC family protein -
  GII79_RS12015 (GII79_12015) nth 2331208..2331867 (-) 660 WP_029726782.1 endonuclease III -
  GII79_RS12020 (GII79_12020) dnaD 2331886..2332584 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=398142 GII79_RS12000 WP_004399067.1 2327255..2327875(+) (recU) [Bacillus subtilis strain MB8_B1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=398142 GII79_RS12000 WP_004399067.1 2327255..2327875(+) (recU) [Bacillus subtilis strain MB8_B1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment