Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GII79_RS05590 Genome accession   NZ_CP045823
Coordinates   1085192..1085770 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080192..1090770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII79_RS05570 (GII79_05570) hemAT 1080703..1082001 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  GII79_RS05575 (GII79_05575) comW 1082140..1083669 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  GII79_RS05580 (GII79_05580) yhxC 1083781..1084638 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  GII79_RS05585 (GII79_05585) yhzC 1084666..1084899 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  GII79_RS05590 (GII79_05590) comK 1085192..1085770 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  GII79_RS05595 (GII79_05595) yhxD 1085817..1086716 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  GII79_RS05600 (GII79_05600) yhjA 1086933..1087202 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  GII79_RS05605 (GII79_05605) yhjB 1087246..1088715 (-) 1470 WP_029726292.1 sodium:solute symporter -
  GII79_RS05610 (GII79_05610) yhjC 1088712..1088912 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  GII79_RS05615 (GII79_05615) - 1089120..1089482 (-) 363 WP_003233132.1 hypothetical protein -
  GII79_RS05620 (GII79_05620) yhjE 1089634..1090257 (+) 624 WP_010886465.1 VTT domain-containing protein -
  GII79_RS05625 (GII79_05625) lepB 1090259..1090765 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=398123 GII79_RS05590 WP_029317573.1 1085192..1085770(+) (comK) [Bacillus subtilis strain MB8_B1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=398123 GII79_RS05590 WP_029317573.1 1085192..1085770(+) (comK) [Bacillus subtilis strain MB8_B1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment