Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSN5_RS19655 Genome accession   NC_014976
Coordinates   3728366..3728644 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis BSn5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723366..3733644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS19635 (BSn5_19290) panEB 3724554..3725465 (+) 912 WP_015715819.1 ketopantoate reductase family protein -
  BSN5_RS19640 (BSn5_19295) ampS 3725499..3726731 (-) 1233 WP_015715820.1 aminopeptidase -
  BSN5_RS19645 (BSn5_19300) ykpC 3726840..3726974 (-) 135 WP_003238865.1 protein YkpC -
  BSN5_RS19650 (BSn5_19305) mreBH 3727075..3728082 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  BSN5_RS19655 (BSn5_19310) abrB 3728366..3728644 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  BSN5_RS19660 (BSn5_19315) kinC 3728834..3730120 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  BSN5_RS19665 (BSn5_19320) ykqA 3730136..3730963 (+) 828 WP_015715821.1 gamma-glutamylcyclotransferase -
  BSN5_RS19670 (BSn5_19325) ktrC 3731026..3731691 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  BSN5_RS19675 (BSn5_19330) ade 3731847..3733580 (+) 1734 WP_015715822.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=39807 BSN5_RS19655 WP_003244728.1 3728366..3728644(+) (abrB) [Bacillus subtilis BSn5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=39807 BSN5_RS19655 WP_003244728.1 3728366..3728644(+) (abrB) [Bacillus subtilis BSn5]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment