Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GII80_RS07820 Genome accession   NZ_CP045821
Coordinates   1496950..1497228 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain MB8_B7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491950..1502228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII80_RS07800 (GII80_07800) panEB 1493137..1494048 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  GII80_RS07805 (GII80_07805) ampS 1494082..1495314 (-) 1233 WP_003232341.1 aminopeptidase -
  GII80_RS07810 (GII80_07810) ykpC 1495424..1495558 (-) 135 WP_003238865.1 protein YkpC -
  GII80_RS07815 (GII80_07815) mreBH 1495659..1496666 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  GII80_RS07820 (GII80_07820) abrB 1496950..1497228 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  GII80_RS07825 (GII80_07825) kinC 1497418..1498704 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  GII80_RS07830 (GII80_07830) ykqA 1498720..1499553 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  GII80_RS07835 (GII80_07835) ktrC 1499616..1500281 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  GII80_RS07840 (GII80_07840) ade 1500436..1502169 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=398056 GII80_RS07820 WP_003244728.1 1496950..1497228(+) (abrB) [Bacillus subtilis strain MB8_B7]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=398056 GII80_RS07820 WP_003244728.1 1496950..1497228(+) (abrB) [Bacillus subtilis strain MB8_B7]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment