Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HQ939_RS09035 Genome accession   NZ_CP054198
Coordinates   1795136..1796512 (+) Length   458 a.a.
NCBI ID   WP_075606468.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1790136..1801512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS09015 (HQ939_09025) - 1791013..1791681 (-) 669 WP_075606471.1 prepilin peptidase -
  HQ939_RS09020 (HQ939_09030) pilC 1791678..1792874 (-) 1197 WP_075606470.1 type II secretion system F family protein Machinery gene
  HQ939_RS09025 (HQ939_09035) pilB 1792867..1794252 (-) 1386 WP_075606469.1 GspE/PulE family protein Machinery gene
  HQ939_RS09030 (HQ939_09040) pilA 1794493..1794948 (-) 456 WP_021117772.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HQ939_RS09035 (HQ939_09045) radA/sms 1795136..1796512 (+) 1377 WP_075606468.1 DNA repair protein RadA Machinery gene
  HQ939_RS09040 (HQ939_09050) gmk 1796564..1797190 (-) 627 WP_075606467.1 guanylate kinase -
  HQ939_RS09045 (HQ939_09055) gpt 1797444..1797923 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  HQ939_RS09050 (HQ939_09060) - 1798103..1799557 (+) 1455 WP_021117775.1 aminoacyl-histidine dipeptidase -
  HQ939_RS09055 (HQ939_09065) - 1799601..1800275 (-) 675 WP_075606466.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  HQ939_RS09060 (HQ939_09070) - 1800460..1801251 (-) 792 WP_235686203.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49517.15 Da        Isoelectric Point: 7.6964

>NTDB_id=398022 HQ939_RS09035 WP_075606468.1 1795136..1796512(+) (radA/sms) [Glaesserella parasuis strain YHP170504]
MAKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKVQRLSEIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=398022 HQ939_RS09035 WP_075606468.1 1795136..1796512(+) (radA/sms) [Glaesserella parasuis strain YHP170504]
ATGGCAAAAGCACCAAAAACTGCGTATGTATGTAATGATTGTGGCGCGGAATATGCTCGTTGGATGGGGCAGTGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGTAAAAGTGATCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAGTTCAGCGACTGTCTGAAATTGATTTGCAGGAAGTGCCACGTTTTAGCAGTGGTTTTTAT
GAGCTAGATCGTGTGCTGGGGGGCGGTATTGTACCTGGTAGTGCGATTTTGATCGGCGGACACCCCGGCGCAGGGAAAAG
TACCTTGCTCTTGCAGGTAATGTGCGGTTTATCGCAAAGTGTGCCGACCCTTTATGTGACGGGGGAAGAGTCGCTACAAC
AGGTGGCAATGCGTGCTAACCGCTTGGGCTTGCCGACGGACAATCTAAAAATGTTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCCAAACTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTGGCGATTA
TTATGGTCGGCCACGTTACCAAAGATGGAACTTTAGCAGGTCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCGCGTTATCGTACCTTACGCAGTCAAAAAAACCGTTTTGGAGCAGTGAACGAACTCGGCGT
ATTTGCAATGACAGAACAGGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAAGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCACTGTTGCTTGCAGTGTTACATCGACACGG
TGGCTTGCAAATGTCTGACCAAGATGTGTTTGTGAATGTGGTCGGCGGTGTAAAAGTCACTGAAACCAGTGCCGACTTAG
CTCTATTGCTGGCACTCATTTCTAGCTTCCGCAATCGTCCGTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATTCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCGGCAAAACACGGCTTTAAGCGTGCGATCAT
TCCTCACGGCAACGCCCCGAAAAAAGCGATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.812

98.908

0.443
  radA Streptococcus mitis SK321

44.592

98.908

0.441
  radA Streptococcus pneumoniae Rx1

45.921

93.668

0.43
  radA Streptococcus pneumoniae D39

45.921

93.668

0.43
  radA Streptococcus pneumoniae R6

45.921

93.668

0.43
  radA Streptococcus pneumoniae TIGR4

45.921

93.668

0.43

Multiple sequence alignment