Detailed information NTG0398016

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: HQ939_RS08900
• Genome accession: NZ_CP054198
• Coordinates: 1761555..1762538 (-)
• Length: 327 a.a.
• NCBI ID: WP_021112621.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain YHP170504
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1756555..1767538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ939_RS08875 (HQ939_08885)	nudB	1757870..1758322 (+)	453	WP_062924328.1	dihydroneopterin triphosphate diphosphatase	-
HQ939_RS08880 (HQ939_08890)	-	1758413..1759153 (+)	741	WP_021110979.1	YebC/PmpR family DNA-binding transcriptional regulator	-
HQ939_RS08885 (HQ939_08895)	-	1759270..1759722 (+)	453	WP_075606434.1	Holliday junction resolvase	-
HQ939_RS08890 (HQ939_08900)	ruvC	1759796..1760374 (+)	579	WP_021110977.1	crossover junction endodeoxyribonuclease RuvC	-
HQ939_RS08895 (HQ939_08905)	-	1760426..1761406 (-)	981	WP_075606435.1	peptide ABC transporter ATP-binding protein	-
HQ939_RS08900 (HQ939_08910)	amiE	1761555..1762538 (-)	984	WP_021112621.1	dipeptide ABC transporter ATP-binding protein	Regulator
HQ939_RS08905 (HQ939_08915)	-	1762549..1763442 (-)	894	WP_005712949.1	ABC transporter permease subunit	-
HQ939_RS08910 (HQ939_08920)	-	1763726..1764730 (-)	1005	WP_075606436.1	ABC transporter permease subunit	-
HQ939_RS08915 (HQ939_08925)	-	1764824..1766419 (-)	1596	WP_042906635.1	ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35885.81 Da
• Isoelectric Point: 7.4230

>NTDB_id=398016 HQ939_RS08900 WP_021112621.1 1761555..1762538(-) (amiE) [Glaesserella parasuis strain YHP170504]
MALLKVDELSVHFGDKKAPFRAVDRVSYEVNEGEVLGIVGESGSGKSVSSLAIMGLIDFPGRVMANSLRFNGHNLLDLKP
KEKQKIVGADVAMIFQDAMTSLNPSYTVGYQIMEALKVHQGGSKAWRKERAIELLTMVGIPDPTSRLDVYPHQLSGGMSQ
RVMIAMAIACNPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAESAHRIIVMYAGQVVEEGKSEQ
IFKSPLHPYTQALLKALPEFAEGKSRLQSLPGVVPGKYDRPQGCLLNPRCPYATDLCRQKEPELRTVNGRQVKCHTPLNE
SGLPVVL

Nucleotide

• Length: 984 bp

>NTDB_id=398016 HQ939_RS08900 WP_021112621.1 1761555..1762538(-) (amiE) [Glaesserella parasuis strain YHP170504]
ATGGCATTATTAAAAGTAGATGAACTTTCGGTTCACTTTGGCGATAAAAAAGCCCCGTTTAGAGCGGTGGATCGAGTAAG
TTATGAAGTCAATGAAGGCGAAGTGCTAGGCATTGTGGGCGAGTCGGGTTCGGGTAAATCGGTCAGTTCCCTTGCAATTA
TGGGGCTTATTGATTTCCCTGGGCGTGTAATGGCAAATTCGTTACGTTTCAACGGACATAATCTGCTTGATTTAAAACCA
AAAGAGAAGCAGAAAATTGTCGGTGCTGATGTAGCGATGATTTTCCAAGATGCAATGACAAGCCTCAACCCAAGTTACAC
TGTGGGTTATCAAATTATGGAAGCCTTGAAGGTTCATCAAGGCGGTTCAAAAGCGTGGAGAAAAGAGCGTGCAATTGAAT
TATTGACGATGGTTGGCATTCCTGATCCAACATCTCGTTTAGATGTCTATCCGCACCAACTTTCAGGCGGTATGAGCCAA
CGTGTGATGATCGCCATGGCGATTGCTTGCAATCCAAAATTATTGATTGCTGACGAGCCAACAACGGCGTTAGATGTAAC
CATTCAAGCACAAATTATTGATTTATTGCTTGAGTTGCAACGCAAAGAAAATATGGCATTGATTTTGATCACTCACGATT
TAGCCTTAGTCGCAGAGTCGGCTCACCGTATTATCGTGATGTATGCAGGGCAAGTGGTAGAAGAAGGCAAGTCTGAACAA
ATTTTTAAATCACCGCTTCATCCTTATACCCAAGCGTTATTAAAAGCATTGCCTGAGTTTGCGGAAGGTAAATCTCGCTT
GCAATCACTACCAGGTGTTGTACCAGGTAAATATGACCGTCCACAAGGTTGCTTGCTCAACCCACGCTGTCCGTATGCAA
CGGATTTATGCCGACAAAAAGAGCCAGAACTACGCACAGTAAACGGCAGACAGGTGAAATGCCATACGCCGTTGAATGAG
AGTGGATTGCCAGTAGTTCTTTAA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	44.586	96.024	0.428
amiE	Streptococcus thermophilus LMG 18311	43.949	96.024	0.422
amiE	Streptococcus thermophilus LMD-9	43.949	96.024	0.422
oppD	Streptococcus mutans UA159	44.444	93.578	0.416