Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HQ939_RS03820 Genome accession   NZ_CP054198
Coordinates   692015..693565 (+) Length   516 a.a.
NCBI ID   WP_021112100.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 687015..698565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS03795 (HQ939_03800) dnaX 687456..689474 (+) 2019 WP_075606147.1 DNA polymerase III subunit gamma/tau -
  HQ939_RS03800 (HQ939_03805) - 689480..690376 (+) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  HQ939_RS03805 (HQ939_03810) - 690398..691153 (+) 756 WP_173631999.1 ABC transporter permease -
  HQ939_RS03810 (HQ939_03815) - 691270..691524 (+) 255 WP_021118772.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  HQ939_RS03815 (HQ939_03820) - 691521..691805 (+) 285 WP_010785923.1 type II toxin-antitoxin system RelE family toxin -
  HQ939_RS03820 (HQ939_03825) sbcB 692015..693565 (+) 1551 WP_021112100.1 exodeoxyribonuclease I Machinery gene
  HQ939_RS03825 (HQ939_03830) - 693648..694607 (+) 960 WP_021117960.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  HQ939_RS03830 (HQ939_03835) - 694642..695238 (+) 597 WP_173632000.1 DNA glycosylase -
  HQ939_RS03835 (HQ939_03840) - 695239..696060 (+) 822 WP_042906514.1 PHP domain-containing protein -
  HQ939_RS03840 (HQ939_03845) ilvN 696167..696658 (-) 492 WP_005712683.1 acetolactate synthase small subunit -
  HQ939_RS03845 (HQ939_03850) - 696651..698372 (-) 1722 WP_005712682.1 acetolactate synthase 3 large subunit -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58895.08 Da        Isoelectric Point: 5.5315

>NTDB_id=397998 HQ939_RS03820 WP_021112100.1 692015..693565(+) (sbcB) [Glaesserella parasuis strain YHP170504]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCRQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLLKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRQACLENLKLLKSQKSLVREKVIDIFSEERNYLASNNIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRTEQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNPEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=397998 HQ939_RS03820 WP_021112100.1 692015..693565(+) (sbcB) [Glaesserella parasuis strain YHP170504]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTCGC
AGGGATCCGCACCGATAGCGATTTCAATATTATCGGTGAACCTGTGATGTTCTACTGCCGACAAACAGAAGATTATTTGC
CGTCACCAGAAGCCGTGATGGTAACAGGGATTACGCCACAGCTTTGTAATCAACAAGGGTTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTGATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAACTGCTCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATCGATCGTCAAGCCTGTTTAGAAAATTTAAAACTGCTAAAATCCCAAAAAAGCCTTGTGCGAGAAAAGGTTATTGA
TATTTTTTCTGAGGAAAGGAATTATCTAGCGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCGATTTTGCGAAATCTAAAACCTGAAGAGCTTGCACATCACGGCTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCACAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGAAAAGATAAAATTATTGACAGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAGTCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(8-186)

Exonuclease C-terminal (ExoI_SH3)

(207-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512