Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HRL54_RS08880 Genome accession   NZ_CP054191
Coordinates   1867995..1869422 (-) Length   475 a.a.
NCBI ID   WP_000980546.1    Uniprot ID   -
Organism   Escherichia coli strain TH9F11     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1862995..1874422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRL54_RS08850 (HRL54_08805) yeeZ 1863050..1863874 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HRL54_RS08855 (HRL54_08810) yeeY 1863920..1864849 (+) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  HRL54_RS08860 (HRL54_08815) yoeI 1865064..1865126 (+) 63 WP_010723108.1 membrane protein YoeI -
  HRL54_RS08865 (HRL54_08820) plaP 1865116..1866474 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HRL54_RS08870 (HRL54_08825) tsuA 1866653..1867711 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  HRL54_RS08875 (HRL54_08830) tsuB 1867725..1867952 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HRL54_RS08880 (HRL54_08835) sbcB 1867995..1869422 (-) 1428 WP_000980546.1 exodeoxyribonuclease I Machinery gene
  HRL54_RS08885 (HRL54_08840) dacD 1869631..1870797 (+) 1167 WP_000830142.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HRL54_RS08890 (HRL54_08845) sbmC 1870915..1871388 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  HRL54_RS08895 (HRL54_08850) yeeA 1871586..1872644 (+) 1059 WP_001200892.1 FUSC family protein -
  HRL54_RS08900 (HRL54_08855) tmaR 1872816..1873145 (+) 330 WP_000450409.1 DUF496 family protein -
  HRL54_RS08905 - 1873246..1873611 (-) 366 WP_223350516.1 EutP/PduV family microcompartment system protein -
  HRL54_RS08910 - 1873882..1874253 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.82 Da        Isoelectric Point: 5.3498

>NTDB_id=397934 HRL54_RS08880 WP_000980546.1 1867995..1869422(-) (sbcB) [Escherichia coli strain TH9F11]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=397934 HRL54_RS08880 WP_000980546.1 1867995..1869422(-) (sbcB) [Escherichia coli strain TH9F11]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579