Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GII82_RS18200 Genome accession   NZ_CP045819
Coordinates   3530087..3530776 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain MB9_B4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3525087..3535776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII82_RS18165 (GII82_18165) flgN 3525267..3525749 (-) 483 WP_014481048.1 flagellar protein FlgN -
  GII82_RS18170 (GII82_18170) flgM 3525765..3526031 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  GII82_RS18175 (GII82_18175) yvyF 3526112..3526531 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GII82_RS18180 (GII82_18180) comFC 3526605..3527327 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  GII82_RS18185 (GII82_18185) comFB 3527291..3527587 (-) 297 WP_015483764.1 late competence protein ComFB -
  GII82_RS18190 (GII82_18190) comFA 3527647..3529038 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  GII82_RS18195 (GII82_18195) fakBA 3529144..3529989 (-) 846 WP_003227986.1 DegV family protein -
  GII82_RS18200 (GII82_18200) degU 3530087..3530776 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GII82_RS18205 (GII82_18205) degS 3530859..3532016 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GII82_RS18210 (GII82_18210) yvyE 3532233..3532886 (+) 654 WP_003227979.1 YigZ family protein -
  GII82_RS18215 (GII82_18215) tagV 3532886..3534061 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GII82_RS18220 (GII82_18220) tagO 3534134..3535210 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=397930 GII82_RS18200 WP_003219701.1 3530087..3530776(-) (degU) [Bacillus subtilis strain MB9_B4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=397930 GII82_RS18200 WP_003219701.1 3530087..3530776(-) (degU) [Bacillus subtilis strain MB9_B4]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment