Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BSN5_RS17465 Genome accession   NC_014976
Coordinates   3328014..3328592 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis BSn5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3323014..3333592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS17445 (BSn5_17075) hemAT 3323525..3324823 (-) 1299 WP_003233150.1 heme-based aerotactic transducer HemAT -
  BSN5_RS17450 (BSn5_17080) comW 3324962..3326491 (-) 1530 WP_015715629.1 FAD-dependent oxidoreductase -
  BSN5_RS17455 (BSn5_17085) yhxC 3326603..3327460 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  BSN5_RS17460 (BSn5_17090) yhzC 3327488..3327721 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BSN5_RS17465 (BSn5_17095) comK 3328014..3328592 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BSN5_RS17470 (BSn5_17100) yhxD 3328639..3329538 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  BSN5_RS17475 (BSn5_17105) yhjA 3329755..3330024 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  BSN5_RS17480 (BSn5_17110) yhjB 3330067..3331536 (-) 1470 WP_003233134.1 sodium:solute symporter -
  BSN5_RS17485 (BSn5_17115) yhjC 3331533..3331733 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BSN5_RS17490 (BSn5_17120) - 3331941..3332303 (-) 363 WP_003233132.1 hypothetical protein -
  BSN5_RS17495 (BSn5_17125) yhjE 3332455..3333078 (+) 624 WP_003233130.1 TVP38/TMEM64 family protein -
  BSN5_RS17500 (BSn5_17130) lepB 3333080..3333586 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=39793 BSN5_RS17465 WP_003245329.1 3328014..3328592(+) (comK) [Bacillus subtilis BSn5]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=39793 BSN5_RS17465 WP_003245329.1 3328014..3328592(+) (comK) [Bacillus subtilis BSn5]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment