Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   HR084_RS20545 Genome accession   NZ_CP054177
Coordinates   4041135..4041929 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain JCL16     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4036135..4046929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS20520 (HR084_20520) - 4037249..4037932 (-) 684 WP_038428106.1 response regulator transcription factor -
  HR084_RS20525 (HR084_20525) - 4038144..4039043 (+) 900 WP_173614396.1 PepSY domain-containing protein -
  HR084_RS20530 (HR084_20530) - 4039204..4039704 (+) 501 WP_015250813.1 PepSY domain-containing protein -
  HR084_RS20535 (HR084_20535) - 4039701..4039830 (-) 130 Protein_4023 hypothetical protein -
  HR084_RS20540 (HR084_20540) htrA 4039851..4041053 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  HR084_RS20545 (HR084_20545) vicX 4041135..4041929 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  HR084_RS20550 (HR084_20550) walI 4041951..4042793 (-) 843 WP_029318542.1 WalRK two-component regulatory system regulator WalI -
  HR084_RS20555 (HR084_20555) walH 4042780..4044147 (-) 1368 WP_159377178.1 WalRK two-component regulatory system regulator WalH -
  HR084_RS20560 (HR084_20560) walK 4044137..4045972 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  HR084_RS20565 (HR084_20565) walR 4045980..4046687 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=397897 HR084_RS20545 WP_003226939.1 4041135..4041929(-) (vicX) [Bacillus subtilis strain JCL16]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=397897 HR084_RS20545 WP_003226939.1 4041135..4041929(-) (vicX) [Bacillus subtilis strain JCL16]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGAATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTTTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCCGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53

Multiple sequence alignment