Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   HR084_RS18590 Genome accession   NZ_CP054177
Coordinates   3650269..3651402 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645269..3656402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS18550 (HR084_18550) ywnA 3645434..3645835 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  HR084_RS18555 (HR084_18555) ureC 3645970..3647679 (-) 1710 WP_038429770.1 urease subunit alpha -
  HR084_RS18560 (HR084_18560) ureB 3647676..3648050 (-) 375 WP_038429771.1 urease subunit beta -
  HR084_RS18565 (HR084_18565) ureA 3648047..3648364 (-) 318 WP_003227724.1 urease subunit gamma -
  HR084_RS18570 (HR084_18570) - 3648556..3648716 (-) 161 Protein_3623 hypothetical protein -
  HR084_RS21210 (HR084_18575) - 3648939..3649163 (-) 225 Protein_3624 urea ABC transporter substrate-binding protein -
  HR084_RS18580 (HR084_18580) csbD 3649375..3649563 (-) 189 WP_003227718.1 stress response protein CsbD -
  HR084_RS18585 (HR084_18585) - 3649636..3650115 (-) 480 WP_003244390.1 hypothetical protein -
  HR084_RS18590 (HR084_18590) rapC 3650269..3651402 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  HR084_RS18595 (HR084_18595) moaA 3651593..3652618 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  HR084_RS18600 (HR084_18600) fdhD 3652634..3653422 (-) 789 WP_038429774.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  HR084_RS18605 (HR084_18605) - 3653655..3653816 (-) 162 WP_003227706.1 hypothetical protein -
  HR084_RS18610 (HR084_18610) ywmD 3653911..3654585 (-) 675 WP_038429775.1 VWA domain-containing protein -
  HR084_RS18615 (HR084_18615) - 3654638..3654778 (-) 141 WP_003227702.1 hypothetical protein -
  HR084_RS18620 (HR084_18620) ywmC 3654909..3655592 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=397887 HR084_RS18590 WP_015251020.1 3650269..3651402(-) (rapC) [Bacillus subtilis strain JCL16]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=397887 HR084_RS18590 WP_015251020.1 3650269..3651402(-) (rapC) [Bacillus subtilis strain JCL16]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424