Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GII82_RS05680 Genome accession   NZ_CP045819
Coordinates   1103713..1104291 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1098713..1109291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII82_RS05660 (GII82_05660) hemAT 1099224..1100522 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  GII82_RS05665 (GII82_05665) comW 1100661..1102190 (-) 1530 WP_029726294.1 FAD-dependent oxidoreductase -
  GII82_RS05670 (GII82_05670) yhxC 1102302..1103159 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  GII82_RS05675 (GII82_05675) yhzC 1103187..1103420 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  GII82_RS05680 (GII82_05680) comK 1103713..1104291 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  GII82_RS05685 (GII82_05685) yhxD 1104338..1105237 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  GII82_RS05690 (GII82_05690) yhjA 1105454..1105723 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  GII82_RS05695 (GII82_05695) yhjB 1105767..1107236 (-) 1470 WP_029726292.1 sodium:solute symporter -
  GII82_RS05700 (GII82_05700) yhjC 1107233..1107433 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  GII82_RS05705 (GII82_05705) - 1107641..1108003 (-) 363 WP_003233132.1 hypothetical protein -
  GII82_RS05710 (GII82_05710) yhjE 1108155..1108778 (+) 624 WP_010886465.1 VTT domain-containing protein -
  GII82_RS05715 (GII82_05715) lepB 1108780..1109286 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=397877 GII82_RS05680 WP_029317573.1 1103713..1104291(+) (comK) [Bacillus subtilis strain MB9_B4]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=397877 GII82_RS05680 WP_029317573.1 1103713..1104291(+) (comK) [Bacillus subtilis strain MB9_B4]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment