Detailed information    

insolico Bioinformatically predicted

Overview


Name   degU   Type   Regulator
Locus tag   GII83_RS18095 Genome accession   NZ_CP045818
Coordinates   3512441..3513130 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain MB9_B6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context


Location: 3507441..3518130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS18060 (GII83_18060) flgN 3507621..3508103 (-) 483 WP_014481048.1 flagellar protein FlgN -
  GII83_RS18065 (GII83_18065) flgM 3508119..3508385 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  GII83_RS18070 (GII83_18070) yvyF 3508466..3508885 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GII83_RS18075 (GII83_18075) comFC 3508959..3509681 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  GII83_RS18080 (GII83_18080) comFB 3509645..3509941 (-) 297 WP_015483764.1 late competence protein ComFB -
  GII83_RS18085 (GII83_18085) comFA 3510001..3511392 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  GII83_RS18090 (GII83_18090) fakBA 3511498..3512343 (-) 846 WP_003227986.1 DegV family protein -
  GII83_RS18095 (GII83_18095) degU 3512441..3513130 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GII83_RS18100 (GII83_18100) degS 3513213..3514370 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GII83_RS18105 (GII83_18105) yvyE 3514587..3515240 (+) 654 WP_003227979.1 YigZ family protein -
  GII83_RS18110 (GII83_18110) tagV 3515240..3516415 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GII83_RS18115 (GII83_18115) tagO 3516488..3517564 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence


Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=397849 GII83_RS18095 WP_003219701.1 3512441..3513130(-) (degU) [Bacillus subtilis strain MB9_B6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=397849 GII83_RS18095 WP_003219701.1 3512441..3513130(-) (degU) [Bacillus subtilis strain MB9_B6]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment