Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GII83_RS12605 Genome accession   NZ_CP045818
Coordinates   2461259..2462026 (-) Length   255 a.a.
NCBI ID   WP_153940200.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2456259..2467026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS12585 (GII83_12585) ppsR 2456433..2457245 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  GII83_RS12590 (GII83_12590) ccpN 2457271..2457909 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  GII83_RS12595 (GII83_12595) glyS 2458042..2460081 (-) 2040 WP_029726706.1 glycine--tRNA ligase subunit beta -
  GII83_RS12600 (GII83_12600) glyQ 2460074..2460961 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  GII83_RS12605 (GII83_12605) recO 2461259..2462026 (-) 768 WP_153940200.1 DNA repair protein RecO Machinery gene
  GII83_RS12610 (GII83_12610) yqzL 2462063..2462206 (-) 144 WP_003230053.1 YqzL family protein -
  GII83_RS12615 (GII83_12615) era 2462354..2463259 (-) 906 WP_003230051.1 GTPase Era -
  GII83_RS12620 (GII83_12620) - 2463240..2463650 (-) 411 WP_003230049.1 cytidine deaminase -
  GII83_RS12625 (GII83_12625) unpK 2463769..2464140 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  GII83_RS12630 (GII83_12630) ybeY 2464121..2464594 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  GII83_RS12635 (GII83_12635) pgpH 2464595..2466730 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29274.97 Da        Isoelectric Point: 7.9590

>NTDB_id=397829 GII83_RS12605 WP_153940200.1 2461259..2462026(-) (recO) [Bacillus subtilis strain MB9_B6]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHCCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=397829 GII83_RS12605 WP_153940200.1 2461259..2462026(-) (recO) [Bacillus subtilis strain MB9_B6]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACTGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment