Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GII83_RS12075 Genome accession   NZ_CP045818
Coordinates   2371357..2372160 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B6     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2366357..2377160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS12050 (GII83_12050) glpQB 2367495..2368226 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  GII83_RS12055 (GII83_12055) yqiI 2368305..2368925 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  GII83_RS12060 (GII83_12060) - 2368945..2369241 (-) 297 WP_014480225.1 hypothetical protein -
  GII83_RS12065 (GII83_12065) - 2369549..2369701 (+) 153 WP_014480226.1 hypothetical protein -
  GII83_RS12070 (GII83_12070) yqiG 2369774..2370892 (+) 1119 WP_029726733.1 NADH-dependent flavin oxidoreductase -
  GII83_RS12075 (GII83_12075) spo0A 2371357..2372160 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GII83_RS12080 (GII83_12080) spoIVB 2372436..2373716 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  GII83_RS12085 (GII83_12085) recN 2373891..2375621 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  GII83_RS12090 (GII83_12090) argR 2375658..2376107 (-) 450 WP_003230265.1 arginine repressor ArgR -
  GII83_RS12095 (GII83_12095) yqxC 2376205..2377050 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=397818 GII83_RS12075 WP_003226427.1 2371357..2372160(-) (spo0A) [Bacillus subtilis strain MB9_B6]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=397818 GII83_RS12075 WP_003226427.1 2371357..2372160(-) (spo0A) [Bacillus subtilis strain MB9_B6]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCTGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment