Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GII83_RS11085 Genome accession   NZ_CP045818
Coordinates   2194325..2194945 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2189325..2199945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS11045 (GII83_11045) ptsA 2190453..2190959 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  GII83_RS11050 (GII83_11050) ypqA 2191097..2191516 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  GII83_RS11055 (GII83_11055) sppG 2191537..2191914 (-) 378 WP_015251832.1 YppG family protein -
  GII83_RS11060 (GII83_11060) yppF 2192102..2192290 (+) 189 WP_003230690.1 YppF family protein -
  GII83_RS11065 (GII83_11065) yppE 2192332..2192703 (-) 372 WP_029726786.1 YppE family protein -
  GII83_RS11070 (GII83_11070) yppD 2192749..2192994 (-) 246 WP_015251831.1 YppD family protein -
  GII83_RS11075 (GII83_11075) sspM 2193193..2193297 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GII83_RS11080 (GII83_11080) yppC 2193322..2194284 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  GII83_RS11085 (GII83_11085) recU 2194325..2194945 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GII83_RS11090 (GII83_11090) ponA 2194967..2197711 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  GII83_RS11095 (GII83_11095) ypoC 2197787..2198281 (-) 495 WP_029726783.1 YpoC family protein -
  GII83_RS11100 (GII83_11100) nth 2198278..2198937 (-) 660 WP_029726782.1 endonuclease III -
  GII83_RS11105 (GII83_11105) dnaD 2198956..2199654 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=397817 GII83_RS11085 WP_004399067.1 2194325..2194945(+) (recU) [Bacillus subtilis strain MB9_B6]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=397817 GII83_RS11085 WP_004399067.1 2194325..2194945(+) (recU) [Bacillus subtilis strain MB9_B6]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment