Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   HR084_RS02455 Genome accession   NZ_CP054177
Coordinates   477961..478395 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain JCL16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472961..483395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS02425 (HR084_02425) ydaD 473609..474469 (+) 861 WP_015252798.1 SDR family oxidoreductase -
  HR084_RS02430 (HR084_02430) lyxE 474485..474988 (+) 504 WP_173613916.1 D-lyxose ketol-isomerase -
  HR084_RS02435 (HR084_02435) ydaF 475075..475626 (+) 552 WP_029317311.1 GNAT family protein -
  HR084_RS02440 (HR084_02440) ydaG 475704..476126 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  HR084_RS02445 (HR084_02445) amj 476632..477441 (+) 810 WP_014478868.1 lipid II flippase Amj -
  HR084_RS02450 (HR084_02450) ydzA 477486..477776 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  HR084_RS02455 (HR084_02455) lrpC 477961..478395 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  HR084_RS02460 (HR084_02460) topB 478460..480643 (+) 2184 WP_173613917.1 DNA topoisomerase III -
  HR084_RS02465 (HR084_02465) ephJ 480846..481934 (+) 1089 WP_173613918.1 glycosyl hydrolase family 8 -
  HR084_RS02470 (HR084_02470) epsK 481915..482766 (+) 852 WP_131227128.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=397772 HR084_RS02455 WP_003246585.1 477961..478395(+) (lrpC) [Bacillus subtilis strain JCL16]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=397772 HR084_RS02455 WP_003246585.1 477961..478395(+) (lrpC) [Bacillus subtilis strain JCL16]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment