Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII85_RS15930 Genome accession   NZ_CP045817
Coordinates   3092867..3093511 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3087867..3098511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS15895 (GII85_15895) mrpB 3089059..3089490 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GII85_RS15900 (GII85_15900) mrpC 3089490..3089831 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII85_RS15905 (GII85_15905) mrpD 3089824..3091305 (+) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  GII85_RS15910 (GII85_15910) mrpE 3091311..3091787 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII85_RS15915 (GII85_15915) mrpF 3091787..3092071 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII85_RS15920 (GII85_15920) mnhG 3092055..3092429 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  GII85_RS15925 (GII85_15925) yuxO 3092468..3092848 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  GII85_RS15930 (GII85_15930) comA 3092867..3093511 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII85_RS15935 (GII85_15935) comP 3093592..3095892 (-) 2301 WP_041850586.1 histidine kinase Regulator
  GII85_RS15940 (GII85_15940) comX 3095904..3096068 (-) 165 WP_015384519.1 competence pheromone ComX -
  GII85_RS15945 (GII85_15945) - 3096081..3096941 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  GII85_RS15950 (GII85_15950) degQ 3097125..3097265 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII85_RS21100 - 3097487..3097549 (+) 63 Protein_3092 hypothetical protein -
  GII85_RS15955 (GII85_15955) - 3097728..3098096 (+) 369 WP_041850584.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=397763 GII85_RS15930 WP_003220716.1 3092867..3093511(-) (comA) [Bacillus subtilis strain P5_B1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=397763 GII85_RS15930 WP_003220716.1 3092867..3093511(-) (comA) [Bacillus subtilis strain P5_B1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment