Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   HR084_RS00330 Genome accession   NZ_CP054177
Coordinates   59805..60035 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain JCL16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54805..65035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS00300 (HR084_00300) ridA 54969..55346 (+) 378 WP_173613857.1 2-iminobutanoate/2-iminopropanoate deaminase -
  HR084_RS00305 (HR084_00305) spoVG 55541..55834 (+) 294 WP_003218346.1 septation regulator SpoVG -
  HR084_RS00310 (HR084_00310) glmU 56027..57397 (+) 1371 WP_173613858.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  HR084_RS00315 (HR084_00315) prsS 57420..58373 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  HR084_RS00320 (HR084_00320) rplYB 58458..59072 (+) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  HR084_RS00325 (HR084_00325) pth 59179..59745 (+) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  HR084_RS00330 (HR084_00330) subA/fin 59805..60035 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  HR084_RS00335 (HR084_00335) mfd 60105..63638 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  HR084_RS00340 (HR084_00340) spoVT 63774..64310 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=397755 HR084_RS00330 WP_003243417.1 59805..60035(+) (subA/fin) [Bacillus subtilis strain JCL16]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=397755 HR084_RS00330 WP_003243417.1 59805..60035(+) (subA/fin) [Bacillus subtilis strain JCL16]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment