Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GII85_RS10910 Genome accession   NZ_CP045817
Coordinates   2173413..2174033 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2168413..2179033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS10870 (GII85_10870) ptsA 2169544..2170050 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  GII85_RS10875 (GII85_10875) ypqA 2170188..2170607 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  GII85_RS10880 (GII85_10880) sppG 2170628..2171005 (-) 378 WP_004398696.1 YppG family protein -
  GII85_RS10885 (GII85_10885) yppF 2171193..2171381 (+) 189 WP_003230690.1 YppF family protein -
  GII85_RS10890 (GII85_10890) yppE 2171420..2171791 (-) 372 WP_021481525.1 YppE family protein -
  GII85_RS10895 (GII85_10895) yppD 2171837..2172082 (-) 246 WP_041849959.1 DUF5446 family protein -
  GII85_RS10900 (GII85_10900) sspM 2172281..2172385 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GII85_RS10905 (GII85_10905) yppC 2172410..2173372 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  GII85_RS10910 (GII85_10910) recU 2173413..2174033 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GII85_RS10915 (GII85_10915) ponA 2174055..2176805 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  GII85_RS10920 (GII85_10920) ypoC 2176880..2177374 (-) 495 WP_041849962.1 YpoC family protein -
  GII85_RS10925 (GII85_10925) nth 2177371..2178030 (-) 660 WP_009967580.1 endonuclease III -
  GII85_RS10930 (GII85_10930) dnaD 2178049..2178747 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=397738 GII85_RS10910 WP_004399067.1 2173413..2174033(+) (recU) [Bacillus subtilis strain P5_B1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=397738 GII85_RS10910 WP_004399067.1 2173413..2174033(+) (recU) [Bacillus subtilis strain P5_B1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment