Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GII85_RS10110 Genome accession   NZ_CP045817
Coordinates   2042124..2043254 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2040759..2052499 2042124..2043254 within 0


Gene organization within MGE regions


Location: 2040759..2052499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS10100 (GII85_10100) - 2040759..2041133 (+) 375 WP_021481445.1 YoqO family protein -
  GII85_RS21205 (GII85_10105) - 2041845..2041991 (+) 147 Protein_1945 phage holin -
  GII85_RS10110 (GII85_10110) rapC 2042124..2043254 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  GII85_RS10115 (GII85_10115) - 2043244..2043387 (+) 144 WP_153801665.1 hypothetical protein -
  GII85_RS21045 - 2043541..2043741 (-) 201 WP_021481449.1 hypothetical protein -
  GII85_RS21050 - 2043963..2044337 (-) 375 Protein_1949 UV damage repair protein UvrX -
  GII85_RS10125 (GII85_10125) - 2044335..2044490 (-) 156 Protein_1950 T7SS effector LXG polymorphic toxin -
  GII85_RS10130 (GII85_10130) yobM 2044591..2045148 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  GII85_RS10135 (GII85_10135) aoxN 2045276..2046712 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  GII85_RS10140 (GII85_10140) csaA 2046962..2047294 (-) 333 WP_032725963.1 chaperone CsaA -
  GII85_RS10145 (GII85_10145) yobQ 2047359..2048084 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  GII85_RS10150 (GII85_10150) yobR 2048099..2048839 (-) 741 WP_041849922.1 GNAT family N-acetyltransferase -
  GII85_RS10155 (GII85_10155) yobS 2048917..2049492 (-) 576 WP_015714086.1 TetR/AcrR family transcriptional regulator -
  GII85_RS10160 (GII85_10160) yobT 2049498..2050199 (-) 702 WP_153940054.1 MBL fold metallo-hydrolase -
  GII85_RS10165 (GII85_10165) yobU 2050275..2050757 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  GII85_RS10170 (GII85_10170) yobV 2050811..2051749 (-) 939 WP_015714088.1 YafY family protein -
  GII85_RS10175 (GII85_10175) csk22 2051954..2052499 (+) 546 WP_015714089.1 mother cell-specific sporulation protein Csk22 -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=397737 GII85_RS10110 WP_021481447.1 2042124..2043254(+) (rapC) [Bacillus subtilis strain P5_B1]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=397737 GII85_RS10110 WP_021481447.1 2042124..2043254(+) (rapC) [Bacillus subtilis strain P5_B1]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment