Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HRS04_RS16275 Genome accession   NZ_CP054169
Coordinates   3166278..3166793 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain STO_Bone1B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3161278..3171793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS04_RS16250 (HRS04_16130) ygaZ 3161677..3162414 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  HRS04_RS16255 (HRS04_16135) ygaH 3162404..3162739 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HRS04_RS16260 (HRS04_16140) emrR 3162830..3163360 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HRS04_RS16265 (HRS04_16145) emrA 3163487..3164659 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HRS04_RS16270 (HRS04_16150) emrB 3164676..3166214 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HRS04_RS16275 (HRS04_16155) luxS 3166278..3166793 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  HRS04_RS16280 (HRS04_16160) gshA 3166943..3168499 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  HRS04_RS16285 (HRS04_16165) yqaA 3168572..3169000 (-) 429 WP_001287457.1 YqaA family protein -
  HRS04_RS16290 (HRS04_16170) yqaB 3168997..3169563 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HRS04_RS16325 (HRS04_16205) csrA 3171296..3171481 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=397707 HRS04_RS16275 WP_001130210.1 3166278..3166793(-) (luxS) [Escherichia coli strain STO_Bone1B]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=397707 HRS04_RS16275 WP_001130210.1 3166278..3166793(-) (luxS) [Escherichia coli strain STO_Bone1B]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment