Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HRS04_RS13110 Genome accession   NZ_CP054169
Coordinates   2490006..2491433 (+) Length   475 a.a.
NCBI ID   WP_073849938.1    Uniprot ID   -
Organism   Escherichia coli strain STO_Bone1B     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2485006..2496433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS04_RS13080 - 2485175..2485546 (+) 372 WP_001295631.1 IS110 family transposase -
  HRS04_RS13085 - 2485817..2486182 (+) 366 WP_223350516.1 EutP/PduV family microcompartment system protein -
  HRS04_RS13090 (HRS04_12965) tmaR 2486283..2486612 (-) 330 WP_000450409.1 DUF496 family protein -
  HRS04_RS13095 (HRS04_12970) yeeA 2486784..2487842 (-) 1059 WP_001200892.1 FUSC family protein -
  HRS04_RS13100 (HRS04_12975) sbmC 2488040..2488513 (-) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  HRS04_RS13105 (HRS04_12980) dacD 2488631..2489797 (-) 1167 Protein_2380 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HRS04_RS13110 (HRS04_12985) sbcB 2490006..2491433 (+) 1428 WP_073849938.1 exodeoxyribonuclease I Machinery gene
  HRS04_RS13115 (HRS04_12990) tsuB 2491476..2491703 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HRS04_RS13120 (HRS04_12995) tsuA 2491717..2492775 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  HRS04_RS13125 (HRS04_13000) plaP 2492954..2494312 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HRS04_RS13130 (HRS04_13005) yoeI 2494302..2494364 (-) 63 WP_010723108.1 membrane protein YoeI -
  HRS04_RS13135 (HRS04_13010) yeeY 2494579..2495508 (-) 930 WP_087760827.1 LysR substrate-binding domain-containing protein -
  HRS04_RS13140 (HRS04_13015) yeeZ 2495554..2496378 (-) 825 WP_000754762.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54470.79 Da        Isoelectric Point: 5.4720

>NTDB_id=397697 HRS04_RS13110 WP_073849938.1 2490006..2491433(+) (sbcB) [Escherichia coli strain STO_Bone1B]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=397697 HRS04_RS13110 WP_073849938.1 2490006..2491433(+) (sbcB) [Escherichia coli strain STO_Bone1B]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581