Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GII86_RS18880 Genome accession   NZ_CP045816
Coordinates   3533447..3534169 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528447..3539169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS18845 (GII86_18845) fliW 3528587..3529018 (-) 432 WP_046160903.1 flagellar assembly protein FliW -
  GII86_RS18850 (GII86_18850) yviE 3529039..3529614 (-) 576 WP_046160904.1 DUF6470 family protein -
  GII86_RS18855 (GII86_18855) flgL 3529661..3530557 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  GII86_RS18860 (GII86_18860) flgK 3530568..3532091 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  GII86_RS18865 (GII86_18865) flgN 3532110..3532592 (-) 483 WP_014481048.1 flagellar protein FlgN -
  GII86_RS18870 (GII86_18870) flgM 3532608..3532874 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  GII86_RS18875 (GII86_18875) yvyF 3532955..3533374 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  GII86_RS18880 (GII86_18880) comFC 3533447..3534169 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  GII86_RS18885 (GII86_18885) comFB 3534133..3534429 (-) 297 WP_003227989.1 late competence protein ComFB -
  GII86_RS18890 (GII86_18890) comFA 3534489..3535880 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  GII86_RS18895 (GII86_18895) fakBA 3535987..3536832 (-) 846 WP_014481053.1 DegV family protein -
  GII86_RS18900 (GII86_18900) degU 3536930..3537619 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  GII86_RS18905 (GII86_18905) degS 3537702..3538859 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=397688 GII86_RS18880 WP_014481051.1 3533447..3534169(-) (comFC) [Bacillus subtilis strain P5_B2]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=397688 GII86_RS18880 WP_014481051.1 3533447..3534169(-) (comFC) [Bacillus subtilis strain P5_B2]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment