Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GII86_RS14965 Genome accession   NZ_CP045816
Coordinates   2758393..2759139 (-) Length   248 a.a.
NCBI ID   WP_082090408.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2753393..2764139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS14935 (GII86_14935) - 2753721..2754155 (+) 435 WP_041345303.1 helix-turn-helix transcriptional regulator -
  GII86_RS14940 (GII86_14940) - 2754169..2754615 (+) 447 WP_041345305.1 ImmA/IrrE family metallo-endopeptidase -
  GII86_RS14945 (GII86_14945) - 2754664..2756082 (+) 1419 WP_042975137.1 recombinase family protein -
  GII86_RS14950 (GII86_14950) radC 2756081..2756502 (-) 422 Protein_2941 DNA repair protein RadC -
  GII86_RS14955 (GII86_14955) maf 2756539..2757108 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  GII86_RS14960 (GII86_14960) spoIIB 2757261..2758259 (-) 999 WP_029318188.1 stage II sporulation protein SpoIIB -
  GII86_RS14965 (GII86_14965) comC 2758393..2759139 (-) 747 WP_082090408.1 A24 family peptidase Machinery gene
  GII86_RS14970 (GII86_14970) folC 2759279..2760571 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GII86_RS14975 (GII86_14975) valS 2760631..2763273 (-) 2643 WP_046160705.1 valine--tRNA ligase -
  GII86_RS14980 (GII86_14980) - 2763721..2763912 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26451.08 Da        Isoelectric Point: 9.7944

>NTDB_id=397678 GII86_RS14965 WP_082090408.1 2758393..2759139(-) (comC) [Bacillus subtilis strain P5_B2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCLFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=397678 GII86_RS14965 WP_082090408.1 2758393..2759139(-) (comC) [Bacillus subtilis strain P5_B2]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCTGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment