Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GII86_RS12940 Genome accession   NZ_CP045816
Coordinates   2424596..2425363 (-) Length   255 a.a.
NCBI ID   WP_046160603.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2419596..2430363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS12920 (GII86_12920) ppsR 2419771..2420583 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  GII86_RS12925 (GII86_12925) ccpN 2420609..2421247 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  GII86_RS12930 (GII86_12930) glyS 2421380..2423419 (-) 2040 WP_046160602.1 glycine--tRNA ligase subunit beta -
  GII86_RS12935 (GII86_12935) glyQ 2423412..2424299 (-) 888 WP_046160664.1 glycine--tRNA ligase subunit alpha -
  GII86_RS12940 (GII86_12940) recO 2424596..2425363 (-) 768 WP_046160603.1 DNA repair protein RecO Machinery gene
  GII86_RS12945 (GII86_12945) yqzL 2425400..2425543 (-) 144 WP_003230053.1 YqzL family protein -
  GII86_RS12950 (GII86_12950) era 2425691..2426596 (-) 906 WP_003230051.1 GTPase Era -
  GII86_RS12955 (GII86_12955) - 2426577..2426987 (-) 411 WP_003230049.1 cytidine deaminase -
  GII86_RS12960 (GII86_12960) unpK 2427106..2427477 (-) 372 WP_046160604.1 diacylglycerol kinase family protein -
  GII86_RS12965 (GII86_12965) ybeY 2427458..2427931 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  GII86_RS12970 (GII86_12970) pgpH 2427932..2430067 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29324.03 Da        Isoelectric Point: 8.3120

>NTDB_id=397670 GII86_RS12940 WP_046160603.1 2424596..2425363(-) (recO) [Bacillus subtilis strain P5_B2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDSGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKHVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=397670 GII86_RS12940 WP_046160603.1 2424596..2425363(-) (recO) [Bacillus subtilis strain P5_B2]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAGTGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACAGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCATGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

98.824

100

0.988

Multiple sequence alignment