Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GII86_RS11415 Genome accession   NZ_CP045816
Coordinates   2155380..2156000 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150380..2161000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS11375 (GII86_11375) ptsA 2151511..2152017 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  GII86_RS11380 (GII86_11380) ypqA 2152155..2152574 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  GII86_RS11385 (GII86_11385) sppG 2152595..2152972 (-) 378 WP_004398696.1 YppG family protein -
  GII86_RS11390 (GII86_11390) yppF 2153160..2153348 (+) 189 WP_003230690.1 YppF family protein -
  GII86_RS11395 (GII86_11395) yppE 2153387..2153758 (-) 372 WP_003246080.1 YppE family protein -
  GII86_RS11400 (GII86_11400) yppD 2153804..2154049 (-) 246 WP_004398488.1 YppD family protein -
  GII86_RS11405 (GII86_11405) sspM 2154248..2154352 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GII86_RS11410 (GII86_11410) yppC 2154377..2155339 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  GII86_RS11415 (GII86_11415) recU 2155380..2156000 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GII86_RS11420 (GII86_11420) ponA 2156022..2158766 (+) 2745 WP_046160510.1 PBP1A family penicillin-binding protein -
  GII86_RS11425 (GII86_11425) ypoC 2158842..2159336 (-) 495 WP_009967579.1 YpoC family protein -
  GII86_RS11430 (GII86_11430) nth 2159333..2159992 (-) 660 WP_009967580.1 endonuclease III -
  GII86_RS11435 (GII86_11435) dnaD 2160011..2160709 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=397658 GII86_RS11415 WP_004399067.1 2155380..2156000(+) (recU) [Bacillus subtilis strain P5_B2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=397658 GII86_RS11415 WP_004399067.1 2155380..2156000(+) (recU) [Bacillus subtilis strain P5_B2]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment