Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GII86_RS08150 Genome accession   NZ_CP045816
Coordinates   1547440..1547718 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain P5_B2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542440..1552718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS08130 (GII86_08130) panEB 1543628..1544539 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  GII86_RS08135 (GII86_08135) ampS 1544573..1545805 (-) 1233 WP_003232341.1 aminopeptidase -
  GII86_RS08140 (GII86_08140) ykpC 1545914..1546048 (-) 135 WP_003238865.1 protein YkpC -
  GII86_RS08145 (GII86_08145) mreBH 1546149..1547156 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  GII86_RS08150 (GII86_08150) abrB 1547440..1547718 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  GII86_RS08155 (GII86_08155) kinC 1547908..1549194 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  GII86_RS08160 (GII86_08160) ykqA 1549210..1550037 (+) 828 WP_046160350.1 gamma-glutamylcyclotransferase -
  GII86_RS08165 (GII86_08165) ktrC 1550100..1550765 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  GII86_RS08170 (GII86_08170) ade 1550921..1552654 (+) 1734 WP_015715822.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=397653 GII86_RS08150 WP_003244728.1 1547440..1547718(+) (abrB) [Bacillus subtilis strain P5_B2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=397653 GII86_RS08150 WP_003244728.1 1547440..1547718(+) (abrB) [Bacillus subtilis strain P5_B2]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment