Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HRS05_RS13925 Genome accession   NZ_CP054161
Coordinates   2931527..2932954 (-) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain STO_Bone2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2926527..2937954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS05_RS13895 (HRS05_13820) yeeZ 2926582..2927406 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  HRS05_RS13900 (HRS05_13825) yeeY 2927452..2928381 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  HRS05_RS13905 (HRS05_13830) yoeI 2928596..2928658 (+) 63 WP_010723108.1 membrane protein YoeI -
  HRS05_RS13910 (HRS05_13835) plaP 2928648..2930006 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HRS05_RS13915 (HRS05_13840) tsuA 2930185..2931243 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  HRS05_RS13920 (HRS05_13845) tsuB 2931257..2931484 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HRS05_RS13925 (HRS05_13850) sbcB 2931527..2932954 (-) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  HRS05_RS13930 (HRS05_13855) dacD 2933163..2934329 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HRS05_RS13935 (HRS05_13860) sbmC 2934448..2934921 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  HRS05_RS13940 (HRS05_13865) yeeA 2935119..2936177 (+) 1059 WP_001200890.1 FUSC family protein -
  HRS05_RS13945 (HRS05_13870) tmaR 2936349..2936678 (+) 330 WP_000450409.1 DUF496 family protein -
  HRS05_RS13950 (HRS05_13875) - 2936779..2936961 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HRS05_RS13955 (HRS05_13880) - 2937024..2937161 (+) 138 Protein_2729 transposase domain-containing protein -
  HRS05_RS13960 (HRS05_13885) - 2937450..2937542 (-) 93 Protein_2730 DUF957 domain-containing protein -
  HRS05_RS13965 (HRS05_13890) yeeW 2937576..2937770 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=397639 HRS05_RS13925 WP_021523141.1 2931527..2932954(-) (sbcB) [Escherichia coli strain STO_Bone2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=397639 HRS05_RS13925 WP_021523141.1 2931527..2932954(-) (sbcB) [Escherichia coli strain STO_Bone2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment