Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GII86_RS05850 Genome accession   NZ_CP045816
Coordinates   1125890..1126468 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120890..1131468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS05830 (GII86_05830) hemAT 1121401..1122699 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  GII86_RS05835 (GII86_05835) comW 1122838..1124367 (-) 1530 WP_046160242.1 FAD-dependent oxidoreductase -
  GII86_RS05840 (GII86_05840) yhxC 1124479..1125336 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  GII86_RS05845 (GII86_05845) yhzC 1125364..1125597 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  GII86_RS05850 (GII86_05850) comK 1125890..1126468 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  GII86_RS05855 (GII86_05855) yhxD 1126515..1127414 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  GII86_RS05860 (GII86_05860) yhjA 1127631..1127900 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  GII86_RS05865 (GII86_05865) yhjB 1127944..1129413 (-) 1470 WP_046160243.1 sodium:solute symporter -
  GII86_RS05870 (GII86_05870) yhjC 1129410..1129610 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  GII86_RS05875 (GII86_05875) - 1129809..1130180 (-) 372 WP_046160244.1 hypothetical protein -
  GII86_RS05880 (GII86_05880) yhjE 1130332..1130955 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  GII86_RS05885 (GII86_05885) lepB 1130957..1131463 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=397639 GII86_RS05850 WP_029317573.1 1125890..1126468(+) (comK) [Bacillus subtilis strain P5_B2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=397639 GII86_RS05850 WP_029317573.1 1125890..1126468(+) (comK) [Bacillus subtilis strain P5_B2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment