Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | HRS05_RS01265 | Genome accession | NZ_CP054161 |
| Coordinates | 265013..265489 (-) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli strain STO_Bone2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 260013..270489
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRS05_RS01235 (HRS05_01220) | - | 260215..260856 (-) | 642 | WP_000439687.1 | L-fuculose-phosphate aldolase | - |
| HRS05_RS01240 (HRS05_01225) | mtnA | 260887..262002 (-) | 1116 | WP_001022014.1 | S-methyl-5-thioribose-1-phosphate isomerase | - |
| HRS05_RS01245 (HRS05_01230) | mtnK | 262012..263271 (-) | 1260 | WP_000132327.1 | S-methyl-5-thioribose kinase | - |
| HRS05_RS01250 (HRS05_01235) | - | 264010..264108 (-) | 99 | Protein_248 | TA system toxin CbtA family protein | - |
| HRS05_RS01255 (HRS05_01240) | - | 264198..264566 (-) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| HRS05_RS01260 (HRS05_01245) | - | 264729..264950 (-) | 222 | WP_235163837.1 | DUF987 domain-containing protein | - |
| HRS05_RS01265 (HRS05_01250) | radC | 265013..265489 (-) | 477 | WP_001186775.1 | JAB domain-containing protein | Machinery gene |
| HRS05_RS01270 (HRS05_01255) | - | 265505..265976 (-) | 472 | Protein_252 | antirestriction protein | - |
| HRS05_RS01275 (HRS05_01265) | - | 266318..266938 (-) | 621 | Protein_253 | DUF932 domain-containing protein | - |
| HRS05_RS01280 (HRS05_01270) | istB | 267026..267772 (-) | 747 | WP_001016257.1 | IS21-like element ISEc12 family helper ATPase IstB | - |
| HRS05_RS01285 (HRS05_01275) | istA | 267787..269328 (-) | 1542 | WP_032350930.1 | IS21-like element ISEc12 family transposase | - |
| HRS05_RS01290 (HRS05_01280) | - | 269522..269722 (-) | 201 | Protein_256 | DUF945 domain-containing protein | - |
| HRS05_RS01295 (HRS05_01285) | - | 269840..270035 (-) | 196 | Protein_257 | DUF905 family protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=397585 HRS05_RS01265 WP_001186775.1 265013..265489(-) (radC) [Escherichia coli strain STO_Bone2]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=397585 HRS05_RS01265 WP_001186775.1 265013..265489(-) (radC) [Escherichia coli strain STO_Bone2]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |