Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   HRE60_RS08110 Genome accession   NZ_CP054153
Coordinates   1814035..1817355 (-) Length   1106 a.a.
NCBI ID   WP_181670690.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1809035..1822355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS08100 (HRE60_08100) - 1809309..1810040 (+) 732 WP_002891763.1 DUF554 domain-containing protein -
  HRE60_RS08105 (HRE60_08105) rexA 1810392..1814045 (-) 3654 WP_181670689.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  HRE60_RS08110 (HRE60_08110) rexB 1814035..1817355 (-) 3321 WP_181670690.1 ATP-dependent nuclease subunit B Machinery gene
  HRE60_RS08115 (HRE60_08115) - 1817605..1818978 (-) 1374 WP_181670691.1 GHKL domain-containing protein -
  HRE60_RS08120 (HRE60_08120) - 1819013..1820323 (-) 1311 WP_038676734.1 hypothetical protein -
  HRE60_RS08125 (HRE60_08125) - 1820604..1822343 (-) 1740 WP_181670692.1 DUF6287 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126008.35 Da        Isoelectric Point: 4.7775

>NTDB_id=397555 HRE60_RS08110 WP_181670690.1 1814035..1817355(-) (rexB) [Streptococcus salivarius strain DB-B5]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDDLKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLVKIFSLAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYRANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTVDEQLTAQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRLQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSQM
ASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEDRSLDIVTQSNSQRGHFVAMSLFNSASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLELSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTSAAEVIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSRGKKEAYLELMAKDEDKNQMQVAEKIVLFPVTDQAVTADNKDQEDNNVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=397555 HRE60_RS08110 WP_181670690.1 1814035..1817355(-) (rexB) [Streptococcus salivarius strain DB-B5]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAAGG
GAAAAGGGTCTTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAAATTACGGTGACTCGTTTTACTCAGATGGCGAGATACTTTATTCTCAATACGAGCAACCCAAAGACTCAG
CTGGATGATACTGGTCTAGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGCGATGATGATCTCAAGGTTTATGGTCG
TTTACGCAAGGATAGTAACTTTATTAATCAATTGGTAGACCTTTACAAAGAGCTGCAACAAGCTAATATGACGGTTCTGG
ATTTGCAGCATCTGGATCAGGTTGAAAAGCAAGAGGATTTGGTCAAGATTTTCAGTTTGGCTCAGGATCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAACTTAGTGCCTTCTTCAAGGAAATTACCTCAGGCCATCTGGATAAGGCACTGGGTAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTTTCTGCCGAGGAGGAGGCTCTGGTTGCCCTCTTGAATGATAAGTGTC
ATCAAATTGTCATTGGGACTTATGCCAGTCAAAAAGCTTATAGGGCTAACTTTGTTTACGGCAATGTTTATCAGGCCTCA
GTGGATTTTTTGAGAACTTTGGCTCAGACCTATAAGGTGACACCCGACTATGTGACGACAGACAAAGAGGGCAATCCTTC
TTTTGCGCGCATTAGTCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGGTGGATGAGCAGCTGACTGCTCAGGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAGGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCA
GATGGCAAGCGCTATAAGGATATTCTGGTCTTACTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGGCAGATTTTCCG
AAAATTTGATATCCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTGG
AACGTATCAAGCGCTATAATTATCGTGCCGAGGATTTGCTTAATCTCGTAAAATCCGGTCTTTATGGTGGTTTTGCTCAA
GAGGATTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGATATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
CAATAGTCGTGATAAGTATGATTTAGACCAGCTCAATGCCTTAAGGTTACAACTGGTAGAGCCCTTGGACAAGTTGCTTA
ATAGTCGCAAACAAAAGGGTTCTAGTCTACTCAAGAAACTTGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTCAGATG
GCTAGTTTGACTGCCAAGGCCAGTGAGGCCGAAAAAGAACAGAACGAACAGGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACTCTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCGGGAATGTTGGCTT
GTGATTACCGTACGGTTCCAGCTACTGTCGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACACTCTGCTCCT
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCTAAGGTAGGGCAAAATAAGAGTCTCCTGTCTGACGAGGAACG
TAGTCGTATCAATGAGGCGACGGATGAAGACAGGAGTTTGGATATTGTTACGCAGAGCAATAGTCAGCGGGGGCATTTTG
TGGCTATGTCACTTTTTAATTCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACTCAAGATGAC
ATGTCGGTTTATTTGAAGGAGCTGCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCCAAGGG
TGACCAGATTGGGAACTACAAGGACCTTCTATCAACTGTCATCGCCCTTAACAGTAGCCATCTAGATGCTGATTTGGATA
AGGAAACGCAGACTTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTTGATGATCAAGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTGGAATT
ATCAGCCTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTTTTGCGTTATGTTTTGGGACTTGAAGAGTTGG
AGTCCATCCATCCAGATGCTCGACACCACGGGACTTACTTGCACCGTGTCTTTGAGCGTGTTATGGGGGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCTTTTGAAATTCTCTATACGGAGGA
CCAAGAGAGTCGCTTATCTCGTCAGATTTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCTG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAAAAATTCTACAA
TGGCCTTAGTCCGCAATTGGTGACCTATCTGGAAGCCCTCCGTCAGACCTATAAGGTTGATGCTGACCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAGCTTAACTTAGCTCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTCATAAG
GAATTAACCTATAAGGGACTTTTTGTGGCTTCAGAAACAGAGCATTTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGCTCGATTACAATATTAAGCTCTTTACAAGTGCTGCTGAAGTTATTCGAA
GCGGGAATTTTGCGGTCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGGCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGAAAGCTCCTGCGTTTACCAAGTAGGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGCAAAAGATGAGGACAAGAATCAGATGCAAGTTGCTGAAAAAATCGTCCTCTTTCCAGTCACTGATCAAGCTGTGA
CAGCAGACAACAAAGACCAGGAGGACAACAATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(746-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.985

98.463

0.433

Multiple sequence alignment