Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GII88_RS00270 Genome accession   NZ_CP045814
Coordinates   50346..50636 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus licheniformis strain P8_B2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 45346..55636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII88_RS00230 (GII88_00230) - 45370..45699 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  GII88_RS00235 (GII88_00235) - 45711..46151 (+) 441 WP_003178158.1 YaaR family protein -
  GII88_RS00240 (GII88_00240) holB 46163..47152 (+) 990 WP_003178160.1 DNA polymerase III subunit delta' -
  GII88_RS00245 (GII88_00245) - 47155..47982 (+) 828 WP_003178162.1 stage 0 sporulation family protein -
  GII88_RS00250 (GII88_00250) yabA 47997..48359 (+) 363 WP_003178164.1 DNA replication initiation control protein YabA -
  GII88_RS00255 (GII88_00255) - 48424..49167 (+) 744 WP_003178166.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GII88_RS00260 (GII88_00260) - 49154..49447 (+) 294 WP_003178169.1 GIY-YIG nuclease family protein -
  GII88_RS00265 (GII88_00265) rsmI 49422..50297 (+) 876 WP_025805862.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GII88_RS00270 (GII88_00270) abrB 50346..50636 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GII88_RS00275 (GII88_00275) metG 51144..53132 (+) 1989 WP_017474309.1 methionine--tRNA ligase -
  GII88_RS00280 (GII88_00280) - 53217..53984 (+) 768 WP_017474310.1 TatD family hydrolase -
  GII88_RS00285 (GII88_00285) - 54101..55426 (+) 1326 WP_003178178.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=397552 GII88_RS00270 WP_085959887.1 50346..50636(-) (abrB) [Bacillus licheniformis strain P8_B2]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=397552 GII88_RS00270 WP_085959887.1 50346..50636(-) (abrB) [Bacillus licheniformis strain P8_B2]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment