Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   HRE60_RS07295 Genome accession   NZ_CP054153
Coordinates   1643025..1643762 (-) Length   245 a.a.
NCBI ID   WP_181670601.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638025..1648762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS07275 (HRE60_07275) - 1639350..1639598 (-) 249 WP_002884680.1 KH domain-containing protein -
  HRE60_RS07280 (HRE60_07280) rpsP 1639610..1639882 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  HRE60_RS07285 (HRE60_07285) - 1640045..1641424 (-) 1380 WP_181670600.1 hypothetical protein -
  HRE60_RS07290 (HRE60_07290) - 1641536..1642714 (-) 1179 WP_002884300.1 GHKL domain-containing protein -
  HRE60_RS07295 (HRE60_07295) comE/comE1 1643025..1643762 (-) 738 WP_181670601.1 LytTR family DNA-binding domain-containing protein Regulator
  HRE60_RS07300 (HRE60_07300) - 1643976..1645289 (+) 1314 WP_181670602.1 matrixin family metalloprotease -
  HRE60_RS07305 (HRE60_07305) tehB 1646070..1646948 (+) 879 WP_181670603.1 SAM-dependent methyltransferase TehB -
  HRE60_RS07310 (HRE60_07310) - 1647031..1647783 (-) 753 WP_048673805.1 DUF4767 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28068.03 Da        Isoelectric Point: 4.7123

>NTDB_id=397545 HRE60_RS07295 WP_181670601.1 1643025..1643762(-) (comE/comE1) [Streptococcus salivarius strain DB-B5]
MLSIIVLEDDALQRHRVSRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDADLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNMSNVTSVDRTANMVFFEGDESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=397545 HRE60_RS07295 WP_181670601.1 1643025..1643762(-) (comE/comE1) [Streptococcus salivarius strain DB-B5]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTAGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACCTTTTATGAGCAAGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTAGATATTGACCTTAAAAATCAAACGAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAG
GATTTGAAAGCACAAATCGCTTTTGTTACAGCCTACTCTGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
GGACTTTGTTGATAAATCCATGGAAGATGCAGATCTTAAGAGAGCCTTGGTAGAACTTTTAGATTTTGCGTATTCGCAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTGACGGTAAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAAACAGCCCCTGTGCCACATAAGTTGATCGCTCACACCAAGTCAAACCTAGTAGAATTCTATGGAAAAATTGC
AGAAGTAGCGAAATTGGATGATATTTTCTTCCAAACGCATCGCTCTTTTGTTGTCAATATGAGTAATGTGACAAGTGTGG
ATCGTACGGCTAATATGGTCTTCTTTGAGGGAGACGAGTCATGCCTCCTATCACGGACACGTAAAAAGGAACTTTTGGAA
CGATTGAAAAATCGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

36.626

99.184

0.363

Multiple sequence alignment