Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BSN5_RS04785 Genome accession   NC_014976
Coordinates   872963..873709 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis BSn5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 867963..878709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS04760 (BSn5_04825) mreC 868369..869241 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  BSN5_RS04765 (BSn5_04830) mreB 869272..870285 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  BSN5_RS04770 (BSn5_04835) radC 870377..871072 (-) 696 WP_003246034.1 DNA repair protein RadC -
  BSN5_RS04775 (BSn5_04840) maf 871109..871678 (-) 570 WP_015714458.1 Maf family nucleotide pyrophosphatase -
  BSN5_RS04780 (BSn5_04845) spoIIB 871831..872829 (-) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  BSN5_RS04785 (BSn5_04850) comC 872963..873709 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  BSN5_RS04790 (BSn5_04855) folC 873849..875141 (-) 1293 WP_015714460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BSN5_RS04795 (BSn5_04860) valS 875201..877843 (-) 2643 WP_015714461.1 valine--tRNA ligase -
  BSN5_RS04800 (BSn5_04865) - 878291..878482 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=39754 BSN5_RS04785 WP_072592551.1 872963..873709(-) (comC) [Bacillus subtilis BSn5]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=39754 BSN5_RS04785 WP_072592551.1 872963..873709(-) (comC) [Bacillus subtilis BSn5]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment