Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   HRE60_RS02090 Genome accession   NZ_CP054153
Coordinates   411482..412234 (+) Length   250 a.a.
NCBI ID   WP_181670976.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 406482..417234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS02085 (HRE60_02085) - 408724..411279 (+) 2556 WP_181670975.1 SH3 domain-containing protein -
  HRE60_RS02090 (HRE60_02090) comE/blpR 411482..412234 (+) 753 WP_181670976.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  HRE60_RS02095 (HRE60_02095) - 412370..412936 (+) 567 WP_181670977.1 transcriptional regulator -
  HRE60_RS02100 (HRE60_02100) ldcB 413226..416975 (+) 3750 WP_181670978.1 LD-carboxypeptidase LdcB/DacB -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28714.24 Da        Isoelectric Point: 5.3919

>NTDB_id=397500 HRE60_RS02090 WP_181670976.1 411482..412234(+) (comE/blpR) [Streptococcus salivarius strain DB-B5]
MLDIFVLEEDYFQQARLEDAIHKSKQIYILRIGKVDLYDKPNQLLECITERGSHLLFFLDIATDSDIEGGILVAKQIRER
DPYASIVFITAHPELLPSTFQYRLAALDFIDKNLPDIEYEDRIISDIGLALSKNGLSQIECAFTIDTKNATIQVPFHKIL
YFETSPTVHKVILHTTEEQIEFYGQLSKIVKQDCRLYKCHKSFVVNPENIVRLDKELGVIYFENGESCLVSKAKQKEIVA
KMLVPKNMAV

Nucleotide


Download         Length: 753 bp        

>NTDB_id=397500 HRE60_RS02090 WP_181670976.1 411482..412234(+) (comE/blpR) [Streptococcus salivarius strain DB-B5]
ATGTTAGATATTTTTGTTTTAGAAGAAGATTATTTTCAACAAGCTCGTCTTGAGGATGCTATCCACAAGTCTAAACAAAT
ATATATTTTAAGAATTGGGAAGGTTGATTTATACGATAAACCCAATCAATTATTAGAGTGTATTACGGAAAGGGGTTCGC
ACTTACTGTTTTTTCTAGATATTGCAACTGATAGTGATATCGAAGGGGGAATATTGGTTGCTAAACAGATACGTGAGCGA
GATCCTTATGCTAGTATTGTTTTCATCACAGCACATCCCGAACTCCTACCATCAACCTTTCAGTATCGCTTAGCTGCACT
TGATTTTATTGACAAGAATTTGCCTGATATTGAATATGAAGATAGGATTATTTCTGATATTGGATTAGCACTTTCTAAAA
ATGGTCTGAGCCAAATAGAGTGTGCTTTTACTATAGATACAAAGAATGCAACTATACAAGTTCCTTTTCATAAGATACTC
TATTTTGAAACATCTCCAACAGTTCATAAGGTGATTCTTCATACAACAGAAGAGCAAATTGAGTTCTATGGTCAATTGTC
AAAAATTGTGAAACAAGATTGCAGACTATATAAATGTCATAAATCATTTGTTGTAAATCCCGAAAACATTGTGAGATTGG
ACAAAGAATTAGGTGTTATTTATTTTGAAAACGGAGAGTCATGCTTGGTTTCAAAAGCTAAACAAAAAGAGATTGTTGCT
AAGATGCTTGTTCCAAAAAACATGGCAGTTTGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

46.091

97.2

0.448
  comE/comE1 Streptococcus equinus JB1

41.736

96.8

0.404

Multiple sequence alignment