Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HRE60_RS00200 Genome accession   NZ_CP054153
Coordinates   26689..27462 (+) Length   257 a.a.
NCBI ID   WP_181670831.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 21689..32462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS00180 (HRE60_00180) mreD 22131..22655 (+) 525 WP_022495821.1 rod shape-determining protein MreD -
  HRE60_RS00185 (HRE60_00185) - 22740..24257 (+) 1518 WP_181670830.1 CHAP domain-containing protein -
  HRE60_RS00190 (HRE60_00190) - 24469..25434 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  HRE60_RS00195 (HRE60_00195) - 25527..26702 (+) 1176 WP_181671304.1 pyridoxal phosphate-dependent aminotransferase -
  HRE60_RS00200 (HRE60_00200) recO 26689..27462 (+) 774 WP_181670831.1 DNA repair protein RecO Machinery gene
  HRE60_RS00205 (HRE60_00205) plsX 27674..28678 (+) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  HRE60_RS00210 (HRE60_00210) - 28678..28923 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  HRE60_RS00215 (HRE60_00215) purC 29182..29889 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29708.83 Da        Isoelectric Point: 4.9545

>NTDB_id=397473 HRE60_RS00200 WP_181670831.1 26689..27462(+) (recO) [Streptococcus salivarius strain DB-B5]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFVEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYVEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=397473 HRE60_RS00200 WP_181670831.1 26689..27462(+) (recO) [Streptococcus salivarius strain DB-B5]
ATGCAGAAGCTTGAGAGTAGAGGACTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGGAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCGTAGAGGATTATAGCCAAGCAGAATCCTTTAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGGCTT
CCTTTTGATTTTTCGTATAAGTTCTCTGGGCTACTTTGTCCAAATCACTATGTAGAGGATGAAAGGCGTAGTCACTTGGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.451

98.444

0.615

Multiple sequence alignment