Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GII90_RS18005 Genome accession   NZ_CP045811
Coordinates   3492152..3492841 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain P9_B1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3487152..3497841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII90_RS17970 (GII90_17970) flgN 3487332..3487814 (-) 483 WP_003227999.1 flagellar protein FlgN -
  GII90_RS17975 (GII90_17975) flgM 3487830..3488096 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  GII90_RS17980 (GII90_17980) yvyF 3488177..3488596 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GII90_RS17985 (GII90_17985) comFC 3488670..3489392 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  GII90_RS17990 (GII90_17990) comFB 3489356..3489652 (-) 297 WP_003227989.1 late competence protein ComFB -
  GII90_RS17995 (GII90_17995) comFA 3489712..3491103 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  GII90_RS18000 (GII90_18000) fakBA 3491209..3492054 (-) 846 WP_003244125.1 DegV family protein -
  GII90_RS18005 (GII90_18005) degU 3492152..3492841 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GII90_RS18010 (GII90_18010) degS 3492924..3494081 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GII90_RS18015 (GII90_18015) yvyE 3494298..3494951 (+) 654 WP_003227979.1 YigZ family protein -
  GII90_RS18020 (GII90_18020) tagV 3494951..3496126 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GII90_RS18025 (GII90_18025) tagO 3496199..3497275 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=397453 GII90_RS18005 WP_003219701.1 3492152..3492841(-) (degU) [Bacillus subtilis strain P9_B1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=397453 GII90_RS18005 WP_003219701.1 3492152..3492841(-) (degU) [Bacillus subtilis strain P9_B1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment