Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | GII90_RS12770 | Genome accession | NZ_CP045811 |
| Coordinates | 2497007..2497417 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain P9_B1 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2492373..2546785 | 2497007..2497417 | within | 0 |
Gene organization within MGE regions
Location: 2492373..2546785
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GII90_RS12745 (GII90_12745) | yqeF | 2492540..2493271 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| GII90_RS12750 (GII90_12750) | cwlH | 2493523..2494275 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| GII90_RS12755 (GII90_12755) | yqeD | 2494462..2495088 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| GII90_RS12760 (GII90_12760) | gnd | 2495107..2496000 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| GII90_RS12765 (GII90_12765) | yqeB | 2496252..2496974 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| GII90_RS12770 (GII90_12770) | nucA/comI | 2497007..2497417 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| GII90_RS12775 (GII90_12775) | - | 2497613..2497960 (+) | 348 | Protein_2474 | sigma-70 family RNA polymerase sigma factor | - |
| GII90_RS12780 (GII90_12780) | spoIVCA | 2497991..2499451 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| GII90_RS21095 | - | 2499409..2499587 (-) | 179 | Protein_2476 | hypothetical protein | - |
| GII90_RS12785 (GII90_12785) | arsC | 2499942..2500361 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| GII90_RS12790 (GII90_12790) | acr3 | 2500373..2501413 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| GII90_RS12795 (GII90_12795) | arsK | 2501436..2501876 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| GII90_RS12800 (GII90_12800) | arsR | 2501937..2502254 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| GII90_RS12805 (GII90_12805) | yqcI | 2502626..2503390 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| GII90_RS12810 (GII90_12810) | rapE | 2503821..2504948 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| GII90_RS12815 (GII90_12815) | phrE | 2504938..2505072 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| GII90_RS12820 (GII90_12820) | - | 2505182..2505340 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| GII90_RS12825 (GII90_12825) | yqcG | 2505710..2507305 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| GII90_RS12830 (GII90_12830) | yqcF | 2507320..2507898 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| GII90_RS12835 (GII90_12835) | - | 2508016..2508162 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| GII90_RS12840 (GII90_12840) | - | 2508159..2508521 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| GII90_RS12845 (GII90_12845) | - | 2508537..2509016 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| GII90_RS12850 (GII90_12850) | cwlA | 2509181..2509999 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| GII90_RS12855 (GII90_12855) | skhD | 2510044..2510466 (-) | 423 | WP_003246208.1 | holin family protein | - |
| GII90_RS12860 (GII90_12860) | xepAK | 2510511..2511404 (-) | 894 | WP_003246010.1 | hypothetical protein | - |
| GII90_RS12865 (GII90_12865) | yqcE | 2511492..2511656 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| GII90_RS12870 (GII90_12870) | yqcD | 2511653..2511988 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| GII90_RS12875 (GII90_12875) | yqcC | 2511998..2513098 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| GII90_RS12880 (GII90_12880) | - | 2513101..2513373 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| GII90_RS12885 (GII90_12885) | yqcA | 2513370..2513948 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| GII90_RS12890 (GII90_12890) | yqbT | 2513932..2514978 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| GII90_RS12895 (GII90_12895) | yqbS | 2514971..2515396 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| GII90_RS12900 (GII90_12900) | yqbR | 2515409..2515672 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| GII90_RS12905 (GII90_12905) | yqbQ | 2515669..2516649 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| GII90_RS12910 (GII90_12910) | emrC | 2516746..2517123 (-) | 378 | WP_105990381.1 | multidrug efflux transporter outer membrane subunit EmrC | - |
| GII90_RS12915 (GII90_12915) | yqbP | 2517432..2518091 (-) | 660 | WP_105990380.1 | LysM peptidoglycan-binding domain-containing protein | - |
| GII90_RS12920 (GII90_12920) | yqbO | 2518084..2522835 (-) | 4752 | WP_153940273.1 | phage tail tape measure protein | - |
| GII90_RS12925 (GII90_12925) | - | 2522838..2522975 (-) | 138 | WP_128753615.1 | hypothetical protein | - |
| GII90_RS12930 (GII90_12930) | - | 2523017..2523466 (-) | 450 | WP_032722171.1 | phage portal protein | - |
| GII90_RS21215 (GII90_12935) | - | 2523622..2523708 (+) | 87 | WP_106610765.1 | putative holin-like toxin | - |
| GII90_RS12940 (GII90_12940) | yqbM | 2524045..2524488 (-) | 444 | WP_153940215.1 | phage tail tube protein | - |
| GII90_RS12945 (GII90_12945) | yqbK | 2524491..2525891 (-) | 1401 | WP_153940216.1 | phage tail sheath family protein | - |
| GII90_RS12950 (GII90_12950) | - | 2525892..2526083 (-) | 192 | WP_153940217.1 | hypothetical protein | - |
| GII90_RS12955 (GII90_12955) | yqbJ | 2526080..2526517 (-) | 438 | WP_153940218.1 | DUF6838 family protein | - |
| GII90_RS12960 (GII90_12960) | yqbI | 2526530..2527033 (-) | 504 | WP_153940219.1 | HK97 gp10 family phage protein | - |
| GII90_RS12965 (GII90_12965) | yqbH | 2527030..2527392 (-) | 363 | WP_153940220.1 | YqbH/XkdH family protein | - |
| GII90_RS12970 (GII90_12970) | gkpG | 2527389..2527784 (-) | 396 | WP_061573749.1 | DUF3199 family protein | - |
| GII90_RS12975 (GII90_12975) | yqbF | 2527789..2528100 (-) | 312 | WP_153940221.1 | YqbF domain-containing protein | - |
| GII90_RS12980 (GII90_12980) | skdG | 2528111..2529046 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| GII90_RS12985 (GII90_12985) | yqbD | 2529065..2530039 (-) | 975 | WP_153912326.1 | XkdF-like putative serine protease domain-containing protein | - |
| GII90_RS12990 (GII90_12990) | - | 2530086..2530733 (-) | 648 | WP_044455008.1 | hypothetical protein | - |
| GII90_RS12995 (GII90_12995) | yqbB | 2530773..2531690 (-) | 918 | WP_153912328.1 | phage head morphogenesis protein | - |
| GII90_RS13000 (GII90_13000) | yqbA | 2531687..2533219 (-) | 1533 | WP_153912330.1 | phage portal protein | - |
| GII90_RS13005 (GII90_13005) | stmB | 2533189..2534517 (-) | 1329 | WP_113712833.1 | PBSX family phage terminase large subunit | - |
| GII90_RS13010 (GII90_13010) | terS | 2534510..2535229 (-) | 720 | WP_029727095.1 | phage terminase small subunit | - |
| GII90_RS13015 (GII90_13015) | - | 2535378..2535572 (-) | 195 | WP_029727096.1 | hypothetical protein | - |
| GII90_RS13020 (GII90_13020) | - | 2535959..2536525 (-) | 567 | WP_029727097.1 | cysteine hydrolase family protein | - |
| GII90_RS13025 (GII90_13025) | - | 2536965..2537843 (-) | 879 | WP_153940274.1 | hypothetical protein | - |
| GII90_RS13030 (GII90_13030) | - | 2537875..2538231 (-) | 357 | WP_019712240.1 | hypothetical protein | - |
| GII90_RS13035 (GII90_13035) | - | 2538265..2538594 (-) | 330 | WP_029727249.1 | hypothetical protein | - |
| GII90_RS13040 (GII90_13040) | - | 2539067..2539522 (-) | 456 | WP_029727250.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| GII90_RS13045 (GII90_13045) | - | 2539782..2540048 (+) | 267 | WP_029727251.1 | hypothetical protein | - |
| GII90_RS13050 (GII90_13050) | yqaO | 2540187..2540393 (-) | 207 | WP_029727252.1 | XtrA/YqaO family protein | - |
| GII90_RS13055 (GII90_13055) | yqaN | 2540475..2540903 (-) | 429 | WP_153940275.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GII90_RS13060 (GII90_13060) | - | 2540999..2541148 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| GII90_RS13065 (GII90_13065) | sknM | 2541139..2542080 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| GII90_RS13070 (GII90_13070) | yqaL | 2541962..2542639 (-) | 678 | WP_116362964.1 | DnaD domain protein | - |
| GII90_RS13075 (GII90_13075) | recT | 2542715..2543569 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| GII90_RS13080 (GII90_13080) | yqaJ | 2543572..2544531 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| GII90_RS13085 (GII90_13085) | - | 2544637..2544831 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| GII90_RS13090 (GII90_13090) | - | 2544791..2544964 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| GII90_RS13095 (GII90_13095) | sknH | 2544961..2545218 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| GII90_RS13100 (GII90_13100) | yqaG | 2545215..2545784 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| GII90_RS13105 (GII90_13105) | - | 2545858..2545998 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| GII90_RS13110 (GII90_13110) | yqaF | 2546028..2546258 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| GII90_RS13115 (GII90_13115) | sknR | 2546435..2546785 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=397435 GII90_RS12770 WP_009967785.1 2497007..2497417(-) (nucA/comI) [Bacillus subtilis strain P9_B1]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=397435 GII90_RS12770 WP_009967785.1 2497007..2497417(-) (nucA/comI) [Bacillus subtilis strain P9_B1]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |