Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BSN5_RS02625 Genome accession   NC_014976
Coordinates   497162..497965 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis BSn5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 492162..502965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS02595 (BSn5_02625) glpQB 493308..494039 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  BSN5_RS02600 (BSn5_02630) yqiI 494118..494738 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  BSN5_RS02605 (BSn5_02635) yqiH 494753..495046 (-) 294 WP_003230284.1 lipoprotein -
  BSN5_RS21835 (BSn5_02640) - 495354..495506 (+) 153 WP_014480226.1 hypothetical protein -
  BSN5_RS02615 (BSn5_02645) yqiG 495579..496697 (+) 1119 WP_015714237.1 NADH-dependent flavin oxidoreductase -
  BSN5_RS02625 (BSn5_02655) spo0A 497162..497965 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  BSN5_RS02635 (BSn5_02665) spoIVB 498241..499521 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  BSN5_RS02640 (BSn5_02670) recN 499695..501425 (-) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  BSN5_RS02645 (BSn5_02675) argR 501462..501911 (-) 450 WP_003230265.1 arginine repressor ArgR -
  BSN5_RS02650 (BSn5_02680) yqxC 502009..502854 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=39735 BSN5_RS02625 WP_003226427.1 497162..497965(-) (spo0A) [Bacillus subtilis BSn5]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=39735 BSN5_RS02625 WP_003226427.1 497162..497965(-) (spo0A) [Bacillus subtilis BSn5]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAAGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment