Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GE073_RS02915 Genome accession   NZ_CP045802
Coordinates   682283..683659 (+) Length   458 a.a.
NCBI ID   WP_028598173.1    Uniprot ID   -
Organism   Paenibacillus sp. B01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 677283..688659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE073_RS02890 (GE073_02890) - 677367..678380 (+) 1014 WP_153782739.1 ABC transporter permease -
  GE073_RS02895 (GE073_02895) - 678448..679812 (+) 1365 WP_153782740.1 LLM class flavin-dependent oxidoreductase -
  GE073_RS02900 (GE073_02900) - 680021..680179 (-) 159 WP_153782741.1 hypothetical protein -
  GE073_RS02905 (GE073_02905) - 680267..681439 (-) 1173 WP_153782742.1 sensor histidine kinase -
  GE073_RS02910 (GE073_02910) - 681436..682152 (-) 717 WP_028598172.1 response regulator transcription factor -
  GE073_RS02915 (GE073_02915) radA 682283..683659 (+) 1377 WP_028598173.1 DNA repair protein RadA Machinery gene
  GE073_RS02920 (GE073_02920) disA 683676..684752 (+) 1077 WP_028598174.1 DNA integrity scanning diadenylate cyclase DisA -
  GE073_RS02925 (GE073_02925) pssA 684861..685613 (+) 753 WP_028598175.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  GE073_RS02930 (GE073_02930) - 685694..686089 (-) 396 WP_028598176.1 hypothetical protein -
  GE073_RS02935 (GE073_02935) - 686315..687424 (+) 1110 WP_028598177.1 PIN/TRAM domain-containing protein -
  GE073_RS02940 (GE073_02940) ispD 687618..688268 (+) 651 WP_267238422.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49033.55 Da        Isoelectric Point: 6.8214

>NTDB_id=397327 GE073_RS02915 WP_028598173.1 682283..683659(+) (radA) [Paenibacillus sp. B01]
MAKVKIKFACTSCGTESPKWLGKCPGCGEWNTMVEEKETVVKTAGVGLSAPMSRGTKEKPRSIIDINTGQEPRIESTIGE
LNRVLGGGVVPGSLILVGGDPGIGKSTLLLQASHALAAAGLKVLYISGEESIRQTKLRADRLGALAESLYVLCETNMEHI
NEAIESVGPDFLVIDSIQTVYDPSVPSAPGSVAQVRECTAHFMRSSKIGGIATVLVGHVTKEGAIAGPRLLEHMVDCVLY
FEGERHHSYRLLRAVKNRFGSTNEIGIFEMGEDGLREVANPSELFLSERPLGVSGSTVVASMEGTRPVLVELQALVAPTH
FPSPRRMSAGFDHHRMALIIAVLEKRMGLFLQTQDAYLNAAGGVRLDEPAVDLAAAVAIASSFKDAPTKPDDVIFGEVGL
TGEVRAVSRAEQRVKEAQKLGFKRVILPEKSLKGWKPPDDIKIVGVNTVAEALRAALE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=397327 GE073_RS02915 WP_028598173.1 682283..683659(+) (radA) [Paenibacillus sp. B01]
GTGGCCAAGGTAAAAATCAAGTTCGCCTGCACGTCGTGCGGCACGGAATCGCCCAAGTGGCTGGGCAAGTGCCCTGGCTG
CGGCGAATGGAACACGATGGTAGAGGAAAAGGAAACGGTTGTCAAGACGGCCGGGGTCGGCTTGTCCGCCCCGATGTCCC
GCGGGACGAAAGAAAAGCCGCGTTCCATCATAGATATCAATACGGGTCAGGAGCCCCGCATCGAGAGCACCATCGGCGAG
CTGAACCGCGTGCTCGGCGGCGGCGTCGTGCCGGGCTCGCTCATCCTCGTCGGAGGCGATCCCGGCATCGGCAAGTCGAC
GCTGCTGCTGCAGGCATCCCATGCCTTGGCCGCGGCCGGACTCAAGGTGCTGTACATCTCGGGCGAGGAGTCGATCCGCC
AGACCAAGCTGCGCGCCGACCGGCTCGGCGCGCTCGCCGAGTCGCTGTATGTACTGTGCGAGACCAATATGGAGCATATT
AACGAGGCGATCGAGTCGGTTGGACCGGATTTCCTCGTCATCGACTCCATCCAGACCGTCTACGATCCGAGCGTGCCTTC
GGCTCCGGGCAGCGTCGCCCAGGTGCGCGAATGCACGGCGCATTTCATGCGCTCGTCCAAGATCGGCGGCATCGCGACGG
TGCTGGTCGGCCATGTGACCAAGGAAGGCGCCATCGCCGGTCCGCGCCTGCTGGAGCATATGGTGGACTGCGTCCTTTAT
TTCGAGGGAGAGCGGCATCATTCCTACCGGCTGCTGCGGGCGGTCAAAAACCGCTTCGGCTCGACCAACGAGATCGGCAT
CTTCGAAATGGGCGAGGACGGCCTGCGCGAGGTCGCCAATCCGTCCGAGCTGTTCCTGTCGGAGCGCCCGCTCGGCGTCT
CCGGCTCGACCGTCGTCGCCAGCATGGAGGGGACGCGTCCGGTGCTCGTGGAGCTGCAGGCGCTCGTCGCGCCGACGCAT
TTTCCGTCGCCGCGGCGGATGTCCGCCGGCTTCGACCATCACCGGATGGCGCTCATCATCGCCGTGCTGGAGAAGCGGAT
GGGCCTGTTCCTGCAGACGCAGGACGCCTATCTCAACGCCGCCGGCGGGGTGCGGCTCGACGAGCCGGCCGTAGACCTGG
CGGCGGCGGTCGCCATCGCCTCCAGCTTCAAGGACGCGCCGACGAAGCCGGACGACGTCATTTTCGGCGAGGTCGGCCTG
ACCGGCGAGGTGCGCGCCGTGTCGCGGGCGGAGCAGCGGGTCAAGGAAGCGCAGAAGCTCGGCTTCAAGCGGGTGATCCT
GCCGGAAAAGAGCCTCAAGGGCTGGAAGCCGCCTGACGATATCAAGATCGTAGGCGTCAATACGGTTGCGGAAGCGCTCC
GCGCGGCGCTTGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.142

100

0.653
  radA Streptococcus mitis NCTC 12261

57.424

100

0.574
  radA Streptococcus mitis SK321

57.424

100

0.574
  radA Streptococcus pneumoniae Rx1

57.205

100

0.572
  radA Streptococcus pneumoniae D39

57.205

100

0.572
  radA Streptococcus pneumoniae R6

57.205

100

0.572
  radA Streptococcus pneumoniae TIGR4

57.205

100

0.572

Multiple sequence alignment